Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
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Accession | NC_011899 |
Length | 2,578,146 |
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The map label for this gene is 220932309
Identifier: 220932309
GI number: 220932309
Start: 1566914
End: 1567738
Strand: Direct
Name: 220932309
Synonym: Hore_14730
Alternate gene names: NA
Gene position: 1566914-1567738 (Clockwise)
Preceding gene: 220932297
Following gene: 220932322
Centisome position: 60.78
GC content: 39.76
Gene sequence:
>825_bases ATGTCTTTTAAAAGAGTATTATTGACTCTATTAACCCTCACTATGATCCTGGGGCTGACAGCCTGTGATAACCTGTCTTT TTTTGGCAAAGAAACCGGTGAAATCCAACTACTCCTGACCGATGCCCCGGCCGATAATGTAGAAAAATTACTGGTAACCA TATCGAGAATAGAAACACATAACGACGAAGAGGGCTGGTTCACAATCCTGGAAGAGGAAAAAGAGTTTGATTTATTAGAA CTTCAGGGGGTTTCTGAATTAATCGGCAAAGACTATTTACCTGAAGGACACTACACTCAAATGAGGGTTTATGTCTCCAA AGCCCGGGTACAAGAATCTGGTAAAGATAGTACAGAACCTGTCGATATTCCTTCTGCAGATCAGACCGGTATTAAACTGG TCAACTCATTTACTGTTTCTCCAGACAAGGTTACCGTCCTGTTGCTTGATTTTGATGCCAGAAAGTCTCTAATTTATCCA AATAATAAATATAAACTTAAACCAACTATAAGGATTATTGAAAAAGTAATCTCAGGAGATATCCAGGGTAAGGTAGTTGA CAGTAATGGTAATGGTATTGCTGAAGCAGCCATTACAGTTTATCACAATGATGAATTTACTGAAGAGGGGTATGTCACTT CTACCAATAGTGGTAATGAAGGTGGCTTTAAACTTCTCGGCCTCGTGGAAGGAACCTATGACCTTGAAATTACTGCCGAC AACTATGATGAATCAACAATAATCGAAGATGTCCAGGTTACAGCCGGTGAGGTTACAACACTGGGTGAAATTGAGCTGAC ATCAAATCAAACTCAGACCAATTAG
Upstream 100 bases:
>100_bases TTTTTAAATTTTTTTTACCCCACCCGGTGTGATACAGGTCACTTAAACCAATCAGTAAATAACTTATCCTTAAAATACAA AAATGAAAGGAGGGATAAAG
Downstream 100 bases:
>100_bases TTCAGTTCTATCTCAATTTAAAAAATAAATAACATCAAAAAAATCAATTATAACAGGTATAATAAAAATATTTAACAAAA AAGGAGAGGGATTTACCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSFKRVLLTLLTLTMILGLTACDNLSFFGKETGEIQLLLTDAPADNVEKLLVTISRIETHNDEEGWFTILEEEKEFDLLE LQGVSELIGKDYLPEGHYTQMRVYVSKARVQESGKDSTEPVDIPSADQTGIKLVNSFTVSPDKVTVLLLDFDARKSLIYP NNKYKLKPTIRIIEKVISGDIQGKVVDSNGNGIAEAAITVYHNDEFTEEGYVTSTNSGNEGGFKLLGLVEGTYDLEITAD NYDESTIIEDVQVTAGEVTTLGEIELTSNQTQTN
Sequences:
>Translated_274_residues MSFKRVLLTLLTLTMILGLTACDNLSFFGKETGEIQLLLTDAPADNVEKLLVTISRIETHNDEEGWFTILEEEKEFDLLE LQGVSELIGKDYLPEGHYTQMRVYVSKARVQESGKDSTEPVDIPSADQTGIKLVNSFTVSPDKVTVLLLDFDARKSLIYP NNKYKLKPTIRIIEKVISGDIQGKVVDSNGNGIAEAAITVYHNDEFTEEGYVTSTNSGNEGGFKLLGLVEGTYDLEITAD NYDESTIIEDVQVTAGEVTTLGEIELTSNQTQTN >Mature_273_residues SFKRVLLTLLTLTMILGLTACDNLSFFGKETGEIQLLLTDAPADNVEKLLVTISRIETHNDEEGWFTILEEEKEFDLLEL QGVSELIGKDYLPEGHYTQMRVYVSKARVQESGKDSTEPVDIPSADQTGIKLVNSFTVSPDKVTVLLLDFDARKSLIYPN NKYKLKPTIRIIEKVISGDIQGKVVDSNGNGIAEAAITVYHNDEFTEEGYVTSTNSGNEGGFKLLGLVEGTYDLEITADN YDESTIIEDVQVTAGEVTTLGEIELTSNQTQTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30270; Mature: 30139
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFKRVLLTLLTLTMILGLTACDNLSFFGKETGEIQLLLTDAPADNVEKLLVTISRIETH CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC NDEEGWFTILEEEKEFDLLELQGVSELIGKDYLPEGHYTQMRVYVSKARVQESGKDSTEP CCCCCEEEEEECCCCCCEEECCCHHHHHCCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCC VDIPSADQTGIKLVNSFTVSPDKVTVLLLDFDARKSLIYPNNKYKLKPTIRIIEKVISGD CCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCEECCCCCEEECHHHHHHHHHHCCC IQGKVVDSNGNGIAEAAITVYHNDEFTEEGYVTSTNSGNEGGFKLLGLVEGTYDLEITAD CCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCEEEEEEEEC NYDESTIIEDVQVTAGEVTTLGEIELTSNQTQTN CCCCCHHHHHEEECCCCEEEEEEEEEECCCCCCC >Mature Secondary Structure SFKRVLLTLLTLTMILGLTACDNLSFFGKETGEIQLLLTDAPADNVEKLLVTISRIETH CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC NDEEGWFTILEEEKEFDLLELQGVSELIGKDYLPEGHYTQMRVYVSKARVQESGKDSTEP CCCCCEEEEEECCCCCCEEECCCHHHHHCCCCCCCCCCEEEEEEEEHHHHHHCCCCCCCC VDIPSADQTGIKLVNSFTVSPDKVTVLLLDFDARKSLIYPNNKYKLKPTIRIIEKVISGD CCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCEECCCCCEEECHHHHHHHHHHCCC IQGKVVDSNGNGIAEAAITVYHNDEFTEEGYVTSTNSGNEGGFKLLGLVEGTYDLEITAD CCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCEEEEEEEEC NYDESTIIEDVQVTAGEVTTLGEIELTSNQTQTN CCCCCHHHHHEEECCCCEEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA