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The map label for this gene is rfaQ [H]

Identifier: 220918790

GI number: 220918790

Start: 4121858

End: 4123084

Strand: Direct

Name: rfaQ [H]

Synonym: A2cp1_3702

Alternate gene names: 220918790

Gene position: 4121858-4123084 (Clockwise)

Preceding gene: 220918789

Following gene: 220918794

Centisome position: 81.96

GC content: 78.73

Gene sequence:

>1227_bases
GTGTATCATCCGCGCCCCGTGCCGGACCCGGTCATCGCCCCCTCGCCCTCCCCCGTCCCGCCTCCCCCGCCGGCTCCGCC
GCGCGGGTTCTTCGCGCGGCTGCGCAAGCAACGCGAGGACGCGCGACGGCAGGCGCAGGTGGGCGGCGGACGGCAGCGGG
GGCCGGTGGGCGACCTCTTCCGCGCGCTCGGGCGCGGGCTGGCGCTGGGGCTCGCGAACCTGGTGCTCCCCCGTCCGCGG
GCGCCGGTGCCGGCGCCCGCGACGATCCGCCGGCTGCTCGTCATCCGCGTGGACGAGCGGGTGGGCAACCAGCTCCTCAC
CACCCCGCTCCTCCGCGCGCTGAAGCTGGGCCTGCCGCGGACCGAGCTCCACCTGCTGGCGCCGAAGCAGGGCCTCCTCG
TCGCCTCGCCGCACGTGGACCGGTTCCACCTCTGGCAGAAGCGCGACGCGTTCCGCGCCCCGCTCCGGCAGCTGGGGCAG
CTGCGTGCGCTCCGGCGCGAGCGGTTCGACGTGGTCCTCGAGGCGGGTCACTGGTCCGCCTGGTCGCTCACCGCCTCGAT
CCTCGCCCGGCTGCTGGGTGGCCGGCGCGCCATCGTGGGCCACGACCGCGGGGAAGCGGCACGCTTCCTCTCGCACCCGG
TGCCGCACGATCCGGCGAGCGTCGCGGAGGTCCCGGCGAAGCTGGAGCTGCTCGCGCCGCTGGGGCTGCCGGCGCGCGGC
CTGGAGCTGGAGACGGGGCTGGGGCGCGACCTCGCGGCCGCCGACGCGGCGCTGGCGGCGGCGGGCATCTCGGGCCCGTT
CGCGCTGCTGAACCCGGGCGCGCGCCTGGCGGACCGGCGCTGGCCGGCGGAGTCCTACGCGGCGGTGGCGCGGGGGCTCT
CCGAGCGCGGCCTCCGCGTGCTGGTGGTCTGGGGCCCGGGCGAGGAAGGGCTGGCGGCGGCCATCGTGGAGGGCTCGGGC
GCGCGGCTCGCGCCGCCGACCGACCTCGACCGGCTCGCGGGGCTGATGCGGCGGGCGCGGCTGGTGGTCTCGAACAACAG
CGGCCCGATGCACCTCGCGGTCGCGGTGGGCGCGCCGACGGTGGGCGTGTTCTTCCGCGGCGACTCGGCGCGCTGGGGCC
ACGCGATCCCGGCGTTCGCGGCGGCGGAGGTGCGGAGCGACGCGGAGGCGCCGGCGGTGCTGGCGGCGTGCGACCGGGTG
CTCTCGCTCGACGCGCGGCGCGGGTGA

Upstream 100 bases:

>100_bases
TCGCGAAGGTGGAGGTTTATAGAGGGACCGCCCGAGGGGTGTCAAGCGGGTTTCGGCACGCCTCGAACACGCCCTCGCGA
CGGGCCTCGGCGGGCCCACG

Downstream 100 bases:

>100_bases
CGGTCCCTCGACTCCGGTCACGGCCTGACGGCCGTGACCTACGCTCGGGATGAGCGCCGGGTCGATGCTCGGGATGAGCG
CGGGGTTGACGCTCGGGATG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MYHPRPVPDPVIAPSPSPVPPPPPAPPRGFFARLRKQREDARRQAQVGGGRQRGPVGDLFRALGRGLALGLANLVLPRPR
APVPAPATIRRLLVIRVDERVGNQLLTTPLLRALKLGLPRTELHLLAPKQGLLVASPHVDRFHLWQKRDAFRAPLRQLGQ
LRALRRERFDVVLEAGHWSAWSLTASILARLLGGRRAIVGHDRGEAARFLSHPVPHDPASVAEVPAKLELLAPLGLPARG
LELETGLGRDLAAADAALAAAGISGPFALLNPGARLADRRWPAESYAAVARGLSERGLRVLVVWGPGEEGLAAAIVEGSG
ARLAPPTDLDRLAGLMRRARLVVSNNSGPMHLAVAVGAPTVGVFFRGDSARWGHAIPAFAAAEVRSDAEAPAVLAACDRV
LSLDARRG

Sequences:

>Translated_408_residues
MYHPRPVPDPVIAPSPSPVPPPPPAPPRGFFARLRKQREDARRQAQVGGGRQRGPVGDLFRALGRGLALGLANLVLPRPR
APVPAPATIRRLLVIRVDERVGNQLLTTPLLRALKLGLPRTELHLLAPKQGLLVASPHVDRFHLWQKRDAFRAPLRQLGQ
LRALRRERFDVVLEAGHWSAWSLTASILARLLGGRRAIVGHDRGEAARFLSHPVPHDPASVAEVPAKLELLAPLGLPARG
LELETGLGRDLAAADAALAAAGISGPFALLNPGARLADRRWPAESYAAVARGLSERGLRVLVVWGPGEEGLAAAIVEGSG
ARLAPPTDLDRLAGLMRRARLVVSNNSGPMHLAVAVGAPTVGVFFRGDSARWGHAIPAFAAAEVRSDAEAPAVLAACDRV
LSLDARRG
>Mature_408_residues
MYHPRPVPDPVIAPSPSPVPPPPPAPPRGFFARLRKQREDARRQAQVGGGRQRGPVGDLFRALGRGLALGLANLVLPRPR
APVPAPATIRRLLVIRVDERVGNQLLTTPLLRALKLGLPRTELHLLAPKQGLLVASPHVDRFHLWQKRDAFRAPLRQLGQ
LRALRRERFDVVLEAGHWSAWSLTASILARLLGGRRAIVGHDRGEAARFLSHPVPHDPASVAEVPAKLELLAPLGLPARG
LELETGLGRDLAAADAALAAAGISGPFALLNPGARLADRRWPAESYAAVARGLSERGLRVLVVWGPGEEGLAAAIVEGSG
ARLAPPTDLDRLAGLMRRARLVVSNNSGPMHLAVAVGAPTVGVFFRGDSARWGHAIPAFAAAEVRSDAEAPAVLAACDRV
LSLDARRG

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=287, Percent_Identity=24.7386759581882, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.-

Molecular weight: Translated: 43487; Mature: 43487

Theoretical pI: Translated: 12.00; Mature: 12.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHPRPVPDPVIAPSPSPVPPPPPAPPRGFFARLRKQREDARRQAQVGGGRQRGPVGDLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RALGRGLALGLANLVLPRPRAPVPAPATIRRLLVIRVDERVGNQLLTTPLLRALKLGLPR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECHHHCHHHHHHHHHHHHHHCCCH
TELHLLAPKQGLLVASPHVDRFHLWQKRDAFRAPLRQLGQLRALRRERFDVVLEAGHWSA
HHEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCH
WSLTASILARLLGGRRAIVGHDRGEAARFLSHPVPHDPASVAEVPAKLELLAPLGLPARG
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCHHHHHCCHHHEEECCCCCCCCC
LELETGLGRDLAAADAALAAAGISGPFALLNPGARLADRRWPAESYAAVARGLSERGLRV
CEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCHHHHHHHHHCHHHCCCEE
LVVWGPGEEGLAAAIVEGSGARLAPPTDLDRLAGLMRRARLVVSNNSGPMHLAVAVGAPT
EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEECCCCCEEEEEEECCCE
VGVFFRGDSARWGHAIPAFAAAEVRSDAEAPAVLAACDRVLSLDARRG
EEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYHPRPVPDPVIAPSPSPVPPPPPAPPRGFFARLRKQREDARRQAQVGGGRQRGPVGDLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
RALGRGLALGLANLVLPRPRAPVPAPATIRRLLVIRVDERVGNQLLTTPLLRALKLGLPR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEECHHHCHHHHHHHHHHHHHHCCCH
TELHLLAPKQGLLVASPHVDRFHLWQKRDAFRAPLRQLGQLRALRRERFDVVLEAGHWSA
HHEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCH
WSLTASILARLLGGRRAIVGHDRGEAARFLSHPVPHDPASVAEVPAKLELLAPLGLPARG
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCHHHHHCCHHHEEECCCCCCCCC
LELETGLGRDLAAADAALAAAGISGPFALLNPGARLADRRWPAESYAAVARGLSERGLRV
CEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCHHHHHHHHHCHHHCCCEE
LVVWGPGEEGLAAAIVEGSGARLAPPTDLDRLAGLMRRARLVVSNNSGPMHLAVAVGAPT
EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEECCCCCEEEEEEECCCE
VGVFFRGDSARWGHAIPAFAAAEVRSDAEAPAVLAACDRVLSLDARRG
EEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA