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The map label for this gene is xerC [H]

Identifier: 220918789

GI number: 220918789

Start: 4120462

End: 4121640

Strand: Direct

Name: xerC [H]

Synonym: A2cp1_3701

Alternate gene names: 220918789

Gene position: 4120462-4121640 (Clockwise)

Preceding gene: 220918788

Following gene: 220918790

Centisome position: 81.93

GC content: 69.04

Gene sequence:

>1179_bases
ATGGCTGTGAAGGTCCGAGAGTACCGTCGGCGCGGCAAGCCGATGGGATGTTGGGAGGCGGACGTGCGGCTTCCGCTGCC
GAGCGGCGAGTTCTATCGGGAACGGGTGCGTGTGCCCGTCTCCGGGAAGACGAGCGCGAAGCGGTGGGCGGACGCACGCG
AAGCAGAAGTGATCAGCCTTGCGCGGAGTGGTCTCGATGCCGAGGCGATCCACGCGAAGCTGAACGGCAAGGGAGCGGCG
AACGAGGCGCGGGTTCCGACCCTCGCCGAATTCGAGAAGCAGTTCATCGAGCACGCGAGGGCGAACCGGCAGAAGGCGAG
CACGGTGTACGCGAAGGAGTCCATCCTCCGCGTCCACCTGGTCCCGGTCCTCGGGACGAAGCGGCTCGACGAGATCACCG
AAGCGGACGTCCAGGCGCTCAAGGTGACACTCGCCGAGCACCGGCCGAAAACGGTCAACAACGTGCTCGCCACGCTCTCG
AAGCTCCTGCGCGTGGCGAAGCGGCTCGGGGTCATCGACGCGGTGCCGGTCGAATCCTTCGAGCTCGTCAAGGCTCCGCT
CGCCGCCGTGCCGTTCTACACGTTCGAGGAGTACGCGGTCCTCGTCGCTGCCGCTCGGCGACTCGACCCGCGCATCCTCG
CGGCGGTGCTCCTTGGCGGGAACGCTGGCCTCCGTGCTGGCGAGGTGGTGGCGCTGGAGCTACCGGACGTGCGCCGGGCG
AACGCCCGGATCACGATCGAGCGTCAGGCGTGGCGTGGAGTCGTGGATACGCCCAAGGGTGGCAAGGGCCGGGTCGTCCC
GATGACCGATGCCCTCAAGGCCGCGCTCGCGGCCGTGCGCCACCTTCGCGGTGCCCGCGTGCTCGTGCAGGACGACGGGT
CCGACCTGACGGCGAAGGTCCTCCGGGGATGGATGAAGAGTGCCCAGCGGCTCGCGGGGCTCAGGCCGACGGGCAACTTC
CACATCCTGCGCCACACGTTCTGCTCGCACCTCGCGATGCGGGGCGCCCCGGCGAAGGTGATCCAGGAGCTGGCGGGGCA
CACGCACCTCTCCACGACGATGCGGTACATGCACCTCGCGGAGGGGCACAAGGAGCAGGCGATCAGGCTGCTCGATGACA
GGCCCGTCACCGCACCGGCAGCAGGCGTGGAGGCCAGGTTGGAGGCGGTGGAGGGCTGA

Upstream 100 bases:

>100_bases
CGCTCCGAGCTGGACGCCCACCTCAAGGCCGCGTGACACCGTCCTCCACCAGCACGGTAGACTCCGGGTCGGCGTGCGTC
GTCGGGGGAGGTCCCTGACG

Downstream 100 bases:

>100_bases
AAAGAAAAACCCCCGGCCGAAGCCGGGGGTTAGATGGAGCGGGAAAAGGGATTTGAACCCTCGACCCTCGCCTTGGCAAG
GCGATGCTCTACCACTGAGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAVKVREYRRRGKPMGCWEADVRLPLPSGEFYRERVRVPVSGKTSAKRWADAREAEVISLARSGLDAEAIHAKLNGKGAA
NEARVPTLAEFEKQFIEHARANRQKASTVYAKESILRVHLVPVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLS
KLLRVAKRLGVIDAVPVESFELVKAPLAAVPFYTFEEYAVLVAAARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA
NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKVLRGWMKSAQRLAGLRPTGNF
HILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHKEQAIRLLDDRPVTAPAAGVEARLEAVEG

Sequences:

>Translated_392_residues
MAVKVREYRRRGKPMGCWEADVRLPLPSGEFYRERVRVPVSGKTSAKRWADAREAEVISLARSGLDAEAIHAKLNGKGAA
NEARVPTLAEFEKQFIEHARANRQKASTVYAKESILRVHLVPVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLS
KLLRVAKRLGVIDAVPVESFELVKAPLAAVPFYTFEEYAVLVAAARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA
NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKVLRGWMKSAQRLAGLRPTGNF
HILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHKEQAIRLLDDRPVTAPAAGVEARLEAVEG
>Mature_391_residues
AVKVREYRRRGKPMGCWEADVRLPLPSGEFYRERVRVPVSGKTSAKRWADAREAEVISLARSGLDAEAIHAKLNGKGAAN
EARVPTLAEFEKQFIEHARANRQKASTVYAKESILRVHLVPVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLSK
LLRVAKRLGVIDAVPVESFELVKAPLAAVPFYTFEEYAVLVAAARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRAN
ARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKVLRGWMKSAQRLAGLRPTGNFH
ILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHKEQAIRLLDDRPVTAPAAGVEARLEAVEG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42917; Mature: 42786

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKVREYRRRGKPMGCWEADVRLPLPSGEFYRERVRVPVSGKTSAKRWADAREAEVISL
CCCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHH
ARSGLDAEAIHAKLNGKGAANEARVPTLAEFEKQFIEHARANRQKASTVYAKESILRVHL
HHCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEE
VPVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLSKLLRVAKRLGVIDAVPVESF
EEHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ELVKAPLAAVPFYTFEEYAVLVAAARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKV
CCEEEEEHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
LRGWMKSAQRLAGLRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH
EGHKEQAIRLLDDRPVTAPAAGVEARLEAVEG
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
AVKVREYRRRGKPMGCWEADVRLPLPSGEFYRERVRVPVSGKTSAKRWADAREAEVISL
CCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHH
ARSGLDAEAIHAKLNGKGAANEARVPTLAEFEKQFIEHARANRQKASTVYAKESILRVHL
HHCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEE
VPVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLSKLLRVAKRLGVIDAVPVESF
EEHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ELVKAPLAAVPFYTFEEYAVLVAAARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKV
CCEEEEEHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
LRGWMKSAQRLAGLRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH
EGHKEQAIRLLDDRPVTAPAAGVEARLEAVEG
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA