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The map label for this gene is dapF [H]

Identifier: 220915716

GI number: 220915716

Start: 672261

End: 673061

Strand: Direct

Name: dapF [H]

Synonym: A2cp1_0597

Alternate gene names: 220915716

Gene position: 672261-673061 (Clockwise)

Preceding gene: 220915713

Following gene: 220915717

Centisome position: 13.37

GC content: 77.9

Gene sequence:

>801_bases
ATGATGCGCCGCGTGCCGCTGCCCTTCGTGAAGTATCACGGCCTCGGGAACGACTTCGTGGTGGTGGACGGGCCGCTCAT
GGACGCCGCGCGCGCCCGGCGGATCTGCGACCGCCGCCGCGGCGTGGGCGCCGACGGCGTGCTCACCGTCCTGCCGCCGC
GCACCGCCGGCGCCACCGCCACCATGCACATCTTCAACTCCGACGGCTCGGTGGCCGCCATGTGCGGGAACGGCATCCGC
TGCGTGGCCCGGCACCTCGCCGACACGCGCGGCCTCGACGGCGACCTCGTCGTCGACACCGACTCCGGGCCGAAGCGCTG
CACCATCCACCGCGGCCCGGGCGGCGCGGTGGAGGCGGTCTCGGTGGAGATGGGCCCGGCGCGGCTCGAGGGCGAGCAGG
AGTTCCGGGTGGGCGGCGAGGCGCTCCGGGCGCTGCGCGTGTCGATGGGCAACCCGCACGCGGTGCTGTTCGACGCGCCG
GAGCGGGCGCGGGCGCTCGCGGTCGGACCCGCGCTCGAGCGGCTGGTGCCGGGCGGCGTGAACGTCGGCTTCGCCCGGCC
CGGCCCGTCGGGCATCGACCTGGTGGTCTGGGAGCGCGGCGCGGGGCTGACCGACGCCTGCGGCACCGGGGCCTGCGCCG
CGGCGGTGGCCGCGGTCTCGCGCGGCCTCGCCCGCGCCGGCGCGCCGGTGGAGGTCCGGCTGCCGGGCGGCGCGCTCGCC
ATCACCGTGGCCCCCGATCTCGTCGGCGTCACCATGCGCGGCCCGGCCGAGCGCGCCTTCACCGGCGAGACGGACCTCTA
G

Upstream 100 bases:

>100_bases
GGGCGGCCGTCGTTGCCCGGGCGGCCCCGCTGCCGGTATCGCCTCGCGGCGCCCCGGAGCGCTCCCGGCGCACCCGGAGC
GCGGGGCGCGCCGCCGGTAT

Downstream 100 bases:

>100_bases
ATGGCGAACGGGCGGATCCTGGTCGTCGACGACGAGCGGTTCTTCCAGGAGCTGTTCCGCGACGTGCTGACCGGCGCCGG
CCACGCGGTCCGCACCTCGT

Product: Diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MMRRVPLPFVKYHGLGNDFVVVDGPLMDAARARRICDRRRGVGADGVLTVLPPRTAGATATMHIFNSDGSVAAMCGNGIR
CVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVEAVSVEMGPARLEGEQEFRVGGEALRALRVSMGNPHAVLFDAP
ERARALAVGPALERLVPGGVNVGFARPGPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRGLARAGAPVEVRLPGGALA
ITVAPDLVGVTMRGPAERAFTGETDL

Sequences:

>Translated_266_residues
MMRRVPLPFVKYHGLGNDFVVVDGPLMDAARARRICDRRRGVGADGVLTVLPPRTAGATATMHIFNSDGSVAAMCGNGIR
CVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVEAVSVEMGPARLEGEQEFRVGGEALRALRVSMGNPHAVLFDAP
ERARALAVGPALERLVPGGVNVGFARPGPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRGLARAGAPVEVRLPGGALA
ITVAPDLVGVTMRGPAERAFTGETDL
>Mature_266_residues
MMRRVPLPFVKYHGLGNDFVVVDGPLMDAARARRICDRRRGVGADGVLTVLPPRTAGATATMHIFNSDGSVAAMCGNGIR
CVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVEAVSVEMGPARLEGEQEFRVGGEALRALRVSMGNPHAVLFDAP
ERARALAVGPALERLVPGGVNVGFARPGPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRGLARAGAPVEVRLPGGALA
ITVAPDLVGVTMRGPAERAFTGETDL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=282, Percent_Identity=36.8794326241135, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 27325; Mature: 27325

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRVPLPFVKYHGLGNDFVVVDGPLMDAARARRICDRRRGVGADGVLTVLPPRTAGATA
CCCCCCCCHHEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE
TMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVEAV
EEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCEEEE
SVEMGPARLEGEQEFRVGGEALRALRVSMGNPHAVLFDAPERARALAVGPALERLVPGGV
EEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEEEEECHHHHHHCCCCC
NVGFARPGPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRGLARAGAPVEVRLPGGALA
EECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
ITVAPDLVGVTMRGPAERAFTGETDL
EEECCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MMRRVPLPFVKYHGLGNDFVVVDGPLMDAARARRICDRRRGVGADGVLTVLPPRTAGATA
CCCCCCCCHHEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE
TMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVEAV
EEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCEEEE
SVEMGPARLEGEQEFRVGGEALRALRVSMGNPHAVLFDAPERARALAVGPALERLVPGGV
EEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEEEEECHHHHHHCCCCC
NVGFARPGPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRGLARAGAPVEVRLPGGALA
EECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
ITVAPDLVGVTMRGPAERAFTGETDL
EEECCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA