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The map label for this gene is exbD [H]

Identifier: 220915409

GI number: 220915409

Start: 322069

End: 322515

Strand: Reverse

Name: exbD [H]

Synonym: A2cp1_0288

Alternate gene names: 220915409

Gene position: 322515-322069 (Counterclockwise)

Preceding gene: 220915410

Following gene: 220915407

Centisome position: 6.41

GC content: 67.11

Gene sequence:

>447_bases
ATGGCGATGGGGCTCGGGTCCAAGCGACCCGTCACCGACATCAACGTCACGCCACTCATCGACGTGGTGCTCGTGCTCCT
GATCATCTTCATGGTGCTCACGCCGCTCGCGGAGAAGCAGAAGTTCATCCGCGTCCCGGAGTACCAGCCGGAGATGCAGC
CGGTCCCGCCCGACTCGGTGCCGCCGGACCAGACGGTCCTCACCGCGCTCGGCAACGGCAACGTCCTCCTGAACAAGCAG
GAGATGACGATCAACGACGCGATGCAGCGGCTGCACGTCGCCTACGACGGGCGCCCGTCGAAGGTGATGTTCTTCAACGC
CGAGGACTCCGTCCGCTACGAGCAGGCCGTCAAGGTGCTCGACGCCGCCCACGGGGCGGGCGTGAACACCATCGGGATGA
TGACCGATCCGCCGCTCGGCGGCGGCGCGGCGGGCGAGCAGCAGTAG

Upstream 100 bases:

>100_bases
CCTACAAGACCATCCGCGAGATGATCTTCGAGATCTCGAAGACGCACATCATGGGCGTCTCCCTCGCCGCGTCCCAGATC
AAGGACAAGGAGAAGTAGCC

Downstream 100 bases:

>100_bases
CCGATCCCGGACGTACGGTTTGGTGGGAGGGCCGGCCGAGCGCCGGCCCTCTTCGTTTTCGTCCGAGCCCGCGAGCACCG
CGGTGACGGCGGGTCGCGAG

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MAMGLGSKRPVTDINVTPLIDVVLVLLIIFMVLTPLAEKQKFIRVPEYQPEMQPVPPDSVPPDQTVLTALGNGNVLLNKQ
EMTINDAMQRLHVAYDGRPSKVMFFNAEDSVRYEQAVKVLDAAHGAGVNTIGMMTDPPLGGGAAGEQQ

Sequences:

>Translated_148_residues
MAMGLGSKRPVTDINVTPLIDVVLVLLIIFMVLTPLAEKQKFIRVPEYQPEMQPVPPDSVPPDQTVLTALGNGNVLLNKQ
EMTINDAMQRLHVAYDGRPSKVMFFNAEDSVRYEQAVKVLDAAHGAGVNTIGMMTDPPLGGGAAGEQQ
>Mature_147_residues
AMGLGSKRPVTDINVTPLIDVVLVLLIIFMVLTPLAEKQKFIRVPEYQPEMQPVPPDSVPPDQTVLTALGNGNVLLNKQE
MTINDAMQRLHVAYDGRPSKVMFFNAEDSVRYEQAVKVLDAAHGAGVNTIGMMTDPPLGGGAAGEQQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=122, Percent_Identity=36.0655737704918, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16012; Mature: 15881

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMGLGSKRPVTDINVTPLIDVVLVLLIIFMVLTPLAEKQKFIRVPEYQPEMQPVPPDSV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCCCCCCCC
PPDQTVLTALGNGNVLLNKQEMTINDAMQRLHVAYDGRPSKVMFFNAEDSVRYEQAVKVL
CCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
DAAHGAGVNTIGMMTDPPLGGGAAGEQQ
HHHCCCCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AMGLGSKRPVTDINVTPLIDVVLVLLIIFMVLTPLAEKQKFIRVPEYQPEMQPVPPDSV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEECCCCCCCCCCCCCCCC
PPDQTVLTALGNGNVLLNKQEMTINDAMQRLHVAYDGRPSKVMFFNAEDSVRYEQAVKVL
CCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
DAAHGAGVNTIGMMTDPPLGGGAAGEQQ
HHHCCCCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]