Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 220915410

GI number: 220915410

Start: 322518

End: 322937

Strand: Reverse

Name: exbD1 [H]

Synonym: A2cp1_0289

Alternate gene names: 220915410

Gene position: 322937-322518 (Counterclockwise)

Preceding gene: 220915411

Following gene: 220915409

Centisome position: 6.42

GC content: 62.38

Gene sequence:

>420_bases
ATGTCCATGGACGTTGGCGGCAAGGGGGTGAAGAGCGAGATCAACGTGACGCCGCTCGTCGACGTCGTGTTGGTGCTCCT
CATCATCTTCATGGTCATCACCCCGATGCTCCAGCGCGGCAAGCCGGTCGTCCTCCCGGACGCGAAGCACGTCTCCGCGC
TGAAGCAGGGCGGTGACCCGATCCTCGTGTCGGTGACGAAGGACGGGAAGATCTGGATCGACAAGGAGGAGGTCCAGAAG
GCGGACCTCTCCCAGATGCTCACCATCGCGATGCAGATGCAGCCGGGCGCGCCGGTGCTGGTGAAGGGCGACCGCGACGT
GACCTACAAGACCATCCGCGAGATGATCTTCGAGATCTCGAAGACGCACATCATGGGCGTCTCCCTCGCCGCGTCCCAGA
TCAAGGACAAGGAGAAGTAG

Upstream 100 bases:

>100_bases
CACCGACTCGGCCACCGAGCTGATGGACTTCTTCATGAAGGAAGGCCGCAGCGAGGTGAAGTAGTCCCCCCCCCCGCGGC
CCGCGAAGGAGACCTGACCG

Downstream 100 bases:

>100_bases
CCATGGCGATGGGGCTCGGGTCCAAGCGACCCGTCACCGACATCAACGTCACGCCACTCATCGACGTGGTGCTCGTGCTC
CTGATCATCTTCATGGTGCT

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSMDVGGKGVKSEINVTPLVDVVLVLLIIFMVITPMLQRGKPVVLPDAKHVSALKQGGDPILVSVTKDGKIWIDKEEVQK
ADLSQMLTIAMQMQPGAPVLVKGDRDVTYKTIREMIFEISKTHIMGVSLAASQIKDKEK

Sequences:

>Translated_139_residues
MSMDVGGKGVKSEINVTPLVDVVLVLLIIFMVITPMLQRGKPVVLPDAKHVSALKQGGDPILVSVTKDGKIWIDKEEVQK
ADLSQMLTIAMQMQPGAPVLVKGDRDVTYKTIREMIFEISKTHIMGVSLAASQIKDKEK
>Mature_138_residues
SMDVGGKGVKSEINVTPLVDVVLVLLIIFMVITPMLQRGKPVVLPDAKHVSALKQGGDPILVSVTKDGKIWIDKEEVQKA
DLSQMLTIAMQMQPGAPVLVKGDRDVTYKTIREMIFEISKTHIMGVSLAASQIKDKEK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15210; Mature: 15079

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMDVGGKGVKSEINVTPLVDVVLVLLIIFMVITPMLQRGKPVVLPDAKHVSALKQGGDP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCE
ILVSVTKDGKIWIDKEEVQKADLSQMLTIAMQMQPGAPVLVKGDRDVTYKTIREMIFEIS
EEEEEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
KTHIMGVSLAASQIKDKEK
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SMDVGGKGVKSEINVTPLVDVVLVLLIIFMVITPMLQRGKPVVLPDAKHVSALKQGGDP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCCE
ILVSVTKDGKIWIDKEEVQKADLSQMLTIAMQMQPGAPVLVKGDRDVTYKTIREMIFEIS
EEEEEECCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
KTHIMGVSLAASQIKDKEK
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]