Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
---|---|
Accession | NC_011883 |
Length | 2,873,437 |
Click here to switch to the map view.
The map label for this gene is 220905493
Identifier: 220905493
GI number: 220905493
Start: 2690030
End: 2692138
Strand: Reverse
Name: 220905493
Synonym: Ddes_2231
Alternate gene names: NA
Gene position: 2692138-2690030 (Counterclockwise)
Preceding gene: 220905494
Following gene: 220905492
Centisome position: 93.69
GC content: 36.89
Gene sequence:
>2109_bases ATGTCACTCGAAATAACTCGTGGAACCATTACCAATCCTGTCGCAATTGGTGGCTTGATTGATGCCTTAAATGCCGCAAA TATCGATGGTTCTTTTTATACTGGGTATCCAATAATCGCCTCAGCTGATTCTAATTATACTTTAGACGCAATATTGATAT CACCCAAGTATGGGGTCATTGCATTTATCTGCAATGACAACGAAAAGAATACTGAAGAGTTATGTGAACAACAAGATCAT CTTTATTTTTTGCTAGAAGGCAATTTAAGTAAGCATGAAATGTTACGTAAAGGTAGGACATTAGCTGTTAAGCCAGTTGT AATAACATATATGCAAGCTGACATGGAAATCAATAAAGATGGATATTTATTTGCATGCCAAGCCAATATTTCAGAAATAA TAAACAACCTTAGTGAGATAGAGGCTATTTACTATAAGTCGCTTTGCGCTGCTATTCAAAGAGTGACATCAATAAAGCCC ATAAAAAAAAGAGAAAGTGTTACACATGGGTCTCGGGGTGATATTTTAAAAAAGATTGAGAAAGAAATTGCAAATCTAGA TCAGTGGCAAAAAAAAGCGGCGATCGAAATTCCAGAAGGATCTCAGAGAATAAGAGGGCTAGCTGGGTCTGGGAAGACTG TTGTCTTGGCGCTCAAAGCTGCCTATCTACATACCCAACATCCTGAATGGAATATTGTCGTTACCTATCATACACGATCT TTGTATCAACAAATTACAGACTTAATAGAGCGTTTTACATTTGAGCATTCTGGAGACAAACCCGATTGGGGGAAGCTGAA GGTAATGCACGCTTGGGGATCTGCTAGTGAGCCAGGAGTATATTCAGAAGCAGCTGAGTCCTTGGGCGTTATTCCAATTA ATTTCGCACTTGCGAAACAAAAATATGGGACGAAGGATGCCCTTAGCGGCATTTGCGAAGAGCTACTCATAAGCATGGAT GAAACATATAAGGCCGACTATGACGCAATCTTAATTGATGAAGCTCAAGATTTGCCAATATCATTCTTCAGAATGGTATA TTTAATGGTTAAAGAGCCCAAAAGAATTTTTTGGGCCTATGATGAACTTCAAAATTTGAATAATAATTTAATGCCTACGG TAGATGAGCTTTTTGGCACACGTGAAAATGGGATAGCGAAAATTACAGTCAAAAACGTTGAGAATGAACCTGCTCGCGAC ATCATTTTACCGATTTGCTATCGCAATACGCCATGGGCATTAACGCTGGCCCACGCCTTGGCATTTGGCATTTATAGAGA GGAAGAACTCGTTCAACTCTTTGAGAATTTAACCTTATGGGAAGAAATCGGGTACACAGTCGAATCAGGCGAACTCAGTT TTGACCATGATGTAACCTTAAGTAGAAAAAATAACTCTTACCCACATTATTTTAATGATCTTCTTACACCAGATGATGCT GTTATAACTAAGGTGTTTAAGAGTGCTGGTGAACAATATGAATGGGCAGCAACTGAAATTATAAAAAATATAAAGACTGA TGAACTAGATCCTGATGACATTATGATAATTTTTCCAGATGCAATCGCTGCTAAAAACCAATACATGGAATTTAGTAAAT TTTTACGACGGCATGATTTAAATATTCATCTTGCAGGGATATCGACTAATAGAGATATTTTTACTGTTAGTGGCTCTATA GCTTCAGCAAATATATATCGTGCAAAAGGGAATGAAGCTCCGATGGTTTATATTCTTAATACAGAATGGTGCGCTGAAGG CATAGAGCTCATTCGAAGAAGAAATACATTATTTACTTCAATCACACGTTCTCGTGCATGGGTAAGAATTTGTGGTGTTG GTGAGGACATGATAAAATTACAAAATGAGATTAATGCAGTAGTTGCGAATAAATTTAAATTAAATTTTAGGATACCAACC TTAGAGAAACTAAAGAAAATGCGTTTGATAAATAGAGATATGTCACTTGAAGAAATTCAAGATGCAAAAGATTTGAGAAA GAAAATTGATACGCTTCTTAAACAAATTGAATCTGGAAAATACCCTCTTGATAAAATTTCACAGCTCAACAAGGTGGTGG AGGAAATAGCAAAAAAGGGTGAACTCTAG
Upstream 100 bases:
>100_bases CAGAGTGAAAAGGTAAAACCGATTGCGCTTGTACTCGCTGTGTACTTATTCTACTCAATATTTTAATAATGATTACGAGC GCTTGAAAAGGAAAATCACG
Downstream 100 bases:
>100_bases TGGCGATACGCGGAAAACCTAAGATAATACTTGATGCCATTGTTAATGTGTTTGAATTATTAAAAAATTCTAACCTTATT TATTATTACAATCCGCCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 702; Mature: 701
Protein sequence:
>702_residues MSLEITRGTITNPVAIGGLIDALNAANIDGSFYTGYPIIASADSNYTLDAILISPKYGVIAFICNDNEKNTEELCEQQDH LYFLLEGNLSKHEMLRKGRTLAVKPVVITYMQADMEINKDGYLFACQANISEIINNLSEIEAIYYKSLCAAIQRVTSIKP IKKRESVTHGSRGDILKKIEKEIANLDQWQKKAAIEIPEGSQRIRGLAGSGKTVVLALKAAYLHTQHPEWNIVVTYHTRS LYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPINFALAKQKYGTKDALSGICEELLISMD ETYKADYDAILIDEAQDLPISFFRMVYLMVKEPKRIFWAYDELQNLNNNLMPTVDELFGTRENGIAKITVKNVENEPARD IILPICYRNTPWALTLAHALAFGIYREEELVQLFENLTLWEEIGYTVESGELSFDHDVTLSRKNNSYPHYFNDLLTPDDA VITKVFKSAGEQYEWAATEIIKNIKTDELDPDDIMIIFPDAIAAKNQYMEFSKFLRRHDLNIHLAGISTNRDIFTVSGSI ASANIYRAKGNEAPMVYILNTEWCAEGIELIRRRNTLFTSITRSRAWVRICGVGEDMIKLQNEINAVVANKFKLNFRIPT LEKLKKMRLINRDMSLEEIQDAKDLRKKIDTLLKQIESGKYPLDKISQLNKVVEEIAKKGEL
Sequences:
>Translated_702_residues MSLEITRGTITNPVAIGGLIDALNAANIDGSFYTGYPIIASADSNYTLDAILISPKYGVIAFICNDNEKNTEELCEQQDH LYFLLEGNLSKHEMLRKGRTLAVKPVVITYMQADMEINKDGYLFACQANISEIINNLSEIEAIYYKSLCAAIQRVTSIKP IKKRESVTHGSRGDILKKIEKEIANLDQWQKKAAIEIPEGSQRIRGLAGSGKTVVLALKAAYLHTQHPEWNIVVTYHTRS LYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPINFALAKQKYGTKDALSGICEELLISMD ETYKADYDAILIDEAQDLPISFFRMVYLMVKEPKRIFWAYDELQNLNNNLMPTVDELFGTRENGIAKITVKNVENEPARD IILPICYRNTPWALTLAHALAFGIYREEELVQLFENLTLWEEIGYTVESGELSFDHDVTLSRKNNSYPHYFNDLLTPDDA VITKVFKSAGEQYEWAATEIIKNIKTDELDPDDIMIIFPDAIAAKNQYMEFSKFLRRHDLNIHLAGISTNRDIFTVSGSI ASANIYRAKGNEAPMVYILNTEWCAEGIELIRRRNTLFTSITRSRAWVRICGVGEDMIKLQNEINAVVANKFKLNFRIPT LEKLKKMRLINRDMSLEEIQDAKDLRKKIDTLLKQIESGKYPLDKISQLNKVVEEIAKKGEL >Mature_701_residues SLEITRGTITNPVAIGGLIDALNAANIDGSFYTGYPIIASADSNYTLDAILISPKYGVIAFICNDNEKNTEELCEQQDHL YFLLEGNLSKHEMLRKGRTLAVKPVVITYMQADMEINKDGYLFACQANISEIINNLSEIEAIYYKSLCAAIQRVTSIKPI KKRESVTHGSRGDILKKIEKEIANLDQWQKKAAIEIPEGSQRIRGLAGSGKTVVLALKAAYLHTQHPEWNIVVTYHTRSL YQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPINFALAKQKYGTKDALSGICEELLISMDE TYKADYDAILIDEAQDLPISFFRMVYLMVKEPKRIFWAYDELQNLNNNLMPTVDELFGTRENGIAKITVKNVENEPARDI ILPICYRNTPWALTLAHALAFGIYREEELVQLFENLTLWEEIGYTVESGELSFDHDVTLSRKNNSYPHYFNDLLTPDDAV ITKVFKSAGEQYEWAATEIIKNIKTDELDPDDIMIIFPDAIAAKNQYMEFSKFLRRHDLNIHLAGISTNRDIFTVSGSIA SANIYRAKGNEAPMVYILNTEWCAEGIELIRRRNTLFTSITRSRAWVRICGVGEDMIKLQNEINAVVANKFKLNFRIPTL EKLKKMRLINRDMSLEEIQDAKDLRKKIDTLLKQIESGKYPLDKISQLNKVVEEIAKKGEL
Specific function: Unknown
COG id: COG3972
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79642; Mature: 79511
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEITRGTITNPVAIGGLIDALNAANIDGSFYTGYPIIASADSNYTLDAILISPKYGVI CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCEEEEEEECCCCCEE AFICNDNEKNTEELCEQQDHLYFLLEGNLSKHEMLRKGRTLAVKPVVITYMQADMEINKD EEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHCCCCEEECCEEEEEEEECEEECCC GYLFACQANISEIINNLSEIEAIYYKSLCAAIQRVTSIKPIKKRESVTHGSRGDILKKIE CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHH KEIANLDQWQKKAAIEIPEGSQRIRGLAGSGKTVVLALKAAYLHTQHPEWNIVVTYHTRS HHHHCHHHHHHHCEEECCCCHHHHHHCCCCCCEEEEEEEEHHHHCCCCCEEEEEEECCHH LYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPINFALAKQ HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEEHHHHHH KYGTKDALSGICEELLISMDETYKADYDAILIDEAQDLPISFFRMVYLMVKEPKRIFWAY CCCCHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHEEEEH DELQNLNNNLMPTVDELFGTRENGIAKITVKNVENEPARDIILPICYRNTPWALTLAHAL HHHHCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHH AFGIYREEELVQLFENLTLWEEIGYTVESGELSFDHDVTLSRKNNSYPHYFNDLLTPDDA HHHHCCHHHHHHHHHCCHHHHHHCCEEECCCCCCCCCEEEECCCCCCCHHHHHCCCCCHH VITKVFKSAGEQYEWAATEIIKNIKTDELDPDDIMIIFPDAIAAKNQYMEFSKFLRRHDL HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC NIHLAGISTNRDIFTVSGSIASANIYRAKGNEAPMVYILNTEWCAEGIELIRRRNTLFTS EEEEEEECCCCEEEEEECCEEECEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH ITRSRAWVRICGVGEDMIKLQNEINAVVANKFKLNFRIPTLEKLKKMRLINRDMSLEEIQ HHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHHHCCCCCHHHHH DAKDLRKKIDTLLKQIESGKYPLDKISQLNKVVEEIAKKGEL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLEITRGTITNPVAIGGLIDALNAANIDGSFYTGYPIIASADSNYTLDAILISPKYGVI CEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCEEEEEEECCCCCEE AFICNDNEKNTEELCEQQDHLYFLLEGNLSKHEMLRKGRTLAVKPVVITYMQADMEINKD EEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHCCCCEEECCEEEEEEEECEEECCC GYLFACQANISEIINNLSEIEAIYYKSLCAAIQRVTSIKPIKKRESVTHGSRGDILKKIE CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHH KEIANLDQWQKKAAIEIPEGSQRIRGLAGSGKTVVLALKAAYLHTQHPEWNIVVTYHTRS HHHHCHHHHHHHCEEECCCCHHHHHHCCCCCCEEEEEEEEHHHHCCCCCEEEEEEECCHH LYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPINFALAKQ HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEEHHHHHH KYGTKDALSGICEELLISMDETYKADYDAILIDEAQDLPISFFRMVYLMVKEPKRIFWAY CCCCHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHEEEEH DELQNLNNNLMPTVDELFGTRENGIAKITVKNVENEPARDIILPICYRNTPWALTLAHAL HHHHCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHH AFGIYREEELVQLFENLTLWEEIGYTVESGELSFDHDVTLSRKNNSYPHYFNDLLTPDDA HHHHCCHHHHHHHHHCCHHHHHHCCEEECCCCCCCCCEEEECCCCCCCHHHHHCCCCCHH VITKVFKSAGEQYEWAATEIIKNIKTDELDPDDIMIIFPDAIAAKNQYMEFSKFLRRHDL HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC NIHLAGISTNRDIFTVSGSIASANIYRAKGNEAPMVYILNTEWCAEGIELIRRRNTLFTS EEEEEEECCCCEEEEEECCEEECEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH ITRSRAWVRICGVGEDMIKLQNEINAVVANKFKLNFRIPTLEKLKKMRLINRDMSLEEIQ HHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHHHHHCCCCCHHHHH DAKDLRKKIDTLLKQIESGKYPLDKISQLNKVVEEIAKKGEL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA