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The map label for this gene is yoeC [H]

Identifier: 220905494

GI number: 220905494

Start: 2692461

End: 2693054

Strand: Reverse

Name: yoeC [H]

Synonym: Ddes_2232

Alternate gene names: 220905494

Gene position: 2693054-2692461 (Counterclockwise)

Preceding gene: 220905495

Following gene: 220905493

Centisome position: 93.72

GC content: 45.79

Gene sequence:

>594_bases
ATGAATAACCCAAATCATCCCAAGCTCGGTTCATCAATACTCGTTCATCCCATCCGAAATCTCAGCGACATACAAGCCAT
CAAGAAAATCCTCGCATCAAAACCCCGTGATCTCCTCCTATTCACTATGGGCATCAACAACGGAATCAGAACCGGAGATC
TACTCAAACTCAAAATCTCAGACATCAAATCCGTCAAACCTAATCAGGCCATTCAAATTAAAGAATCCAAGACCGGAAAG
ACCAATACGCTTTTCATTAACAGGGAGGTCTACAAAGCCCTCAGAGGACATCTGGACGCGTTTAACTCCAAAGATGATGA
TTACCTCTTCGCCTCAAAAAAAGGCGCTCAGAAGCCTCTACAGATTCAAACCGTTAACCGCATGATCAAATCATGGTGCT
GGGCCATAAATCTACCCGGAAATTACGGCGCTCACACCCTGAGAAAGACCTTTGGTTACATCCAACGGACAAAATTTGGT
GTCGGGTTCGAGATCCTCTGCAAGCGCTTTAACCATTCATCACCAGCAGTGACCATGCGTTATCTCGGCATTGAGGACGC
CGAAGTGCTCGAAATCCTCACGCACGAAATCTAA

Upstream 100 bases:

>100_bases
AATCATTCCAATATATTAAATCCAACTCAAACCGACTGTGTACATATAATATTAACTAATATACTGATATTTCATATAAA
CTTAACATTAGAGGCTTGCC

Downstream 100 bases:

>100_bases
ACAGGATATACAAAATGTATACGAATGTATTTAAATGGACAGGATGTATATTCTTAATAGCCTGATATTATTGACTGTCT
TGGCTTAGAGATTCCGGCCC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MNNPNHPKLGSSILVHPIRNLSDIQAIKKILASKPRDLLLFTMGINNGIRTGDLLKLKISDIKSVKPNQAIQIKESKTGK
TNTLFINREVYKALRGHLDAFNSKDDDYLFASKKGAQKPLQIQTVNRMIKSWCWAINLPGNYGAHTLRKTFGYIQRTKFG
VGFEILCKRFNHSSPAVTMRYLGIEDAEVLEILTHEI

Sequences:

>Translated_197_residues
MNNPNHPKLGSSILVHPIRNLSDIQAIKKILASKPRDLLLFTMGINNGIRTGDLLKLKISDIKSVKPNQAIQIKESKTGK
TNTLFINREVYKALRGHLDAFNSKDDDYLFASKKGAQKPLQIQTVNRMIKSWCWAINLPGNYGAHTLRKTFGYIQRTKFG
VGFEILCKRFNHSSPAVTMRYLGIEDAEVLEILTHEI
>Mature_197_residues
MNNPNHPKLGSSILVHPIRNLSDIQAIKKILASKPRDLLLFTMGINNGIRTGDLLKLKISDIKSVKPNQAIQIKESKTGK
TNTLFINREVYKALRGHLDAFNSKDDDYLFASKKGAQKPLQIQTVNRMIKSWCWAINLPGNYGAHTLRKTFGYIQRTKFG
VGFEILCKRFNHSSPAVTMRYLGIEDAEVLEILTHEI

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22288; Mature: 22288

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPNHPKLGSSILVHPIRNLSDIQAIKKILASKPRDLLLFTMGINNGIRTGDLLKLKIS
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEC
DIKSVKPNQAIQIKESKTGKTNTLFINREVYKALRGHLDAFNSKDDDYLFASKKGAQKPL
CCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
QIQTVNRMIKSWCWAINLPGNYGAHTLRKTFGYIQRTKFGVGFEILCKRFNHSSPAVTMR
HHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEE
YLGIEDAEVLEILTHEI
EECCCHHHHHHHHHHCC
>Mature Secondary Structure
MNNPNHPKLGSSILVHPIRNLSDIQAIKKILASKPRDLLLFTMGINNGIRTGDLLKLKIS
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEC
DIKSVKPNQAIQIKESKTGKTNTLFINREVYKALRGHLDAFNSKDDDYLFASKKGAQKPL
CCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
QIQTVNRMIKSWCWAINLPGNYGAHTLRKTFGYIQRTKFGVGFEILCKRFNHSSPAVTMR
HHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEE
YLGIEDAEVLEILTHEI
EECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]