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The map label for this gene is cydA [H]

Identifier: 220905458

GI number: 220905458

Start: 2646090

End: 2647406

Strand: Reverse

Name: cydA [H]

Synonym: Ddes_2196

Alternate gene names: 220905458

Gene position: 2647406-2646090 (Counterclockwise)

Preceding gene: 220905460

Following gene: 220905457

Centisome position: 92.13

GC content: 55.43

Gene sequence:

>1317_bases
ATGGACGTCGTAATGCTTTCGCGTCTGCAATTCGCTGTGGCCGTGTTTTTTCACTTTGTTTTCGTGCCTCTCACGCTGGG
CCTCTCGGTAATTATTGCCTGGATGGAAACCCGCTATGTACGGACCGGGGACGAATTCTGGAAAAAACAGACCAAATTCT
GGGGAAAACTTTTTGTCATCAACTTTACCTTGGGCGTGGTGACCGGGATTACACTGGAATTCCAGTTCGGCACCAACTGG
TCAAGGTATTCTGAATATGTGGGCGATATTTTCGGCTCGCTGCTTGCCATTGAAGCCACGGTGGCCTTTTTTCTCGAGTC
CACCTTTCTGGCGGTCTGGCACTTCGGCTGGAACCGTGTGGGCAAGAAGCTGCACCTCGCCTCCATATGGCTTGTGGCCA
TCGCAGGCAATATTTCTGCGCTCTGGATCATTCTTGCCAACGGCTTCATGCAGAACCCCGTGGGCTACTACATCAACGAA
GCCAACAACCGCGCCGAGCTTTCAAGCTTTTATGATGTCGTTACAAACCCCTACGCCTGGGGCATGTATGCGCATACCGT
CATAGCCTCGTGGGCGCTCGGCGGTTTCTTTGTGCTTGGCGTTTCGGCCTGGCATCTGCTGCGCAAGAGCAATACCGAAT
TTTTCAGCCGTTCTTTCAGGATGGTGGCGCCTTTTACCCTGATCTTCGTGCTGCTGCTGGCCCTTTCCGGCGACCAGCAG
GGCAAGACCGTGGCCAAGTATCAGCCTGCCAAGCTGGCCGCTATGGAAGCGCACTGGGAAACACAGTCTGACGTGCCTTT
CTATCTGCTGGTGTGGCCTGACCCGGAAAATGAAACAAATACCGTGCAGGCCCTCGGCATTCCCGGCCTGCTGAGCTGGA
TCGCCTTTGACGATGTGCACGCCGAGGTGAAGGGCCTCAAGGCTTTTGCCAAGGAAGACCGGCCCCCGGTACTGCCCGTG
TTTTTGACATTCCGCACCATGGTGGCCCTGGCGGGCATATTTCTGGTGCTTTCGGCATGGGCCTTTTTCCAGCGCAAGAA
GGAAAACCCCAACCCGTTGCTGCTCAGGCTGCTGGTGTACAATATTCCACTGCCCTACATCGGCCTGATGGTGGGCTGGG
CCGTGACGGAAATCGGCCGCCAGCCATGGATCGTCTATAATCTCATGCGCACCACAGATGCCGTTTCGCCCATACCGGCC
GACAATGTGGTCATTTCTCTGGTGGCCTTTATCGGCGTATACTCGCTGCTTGGCATTCTGGACATCTATCTGCTGCGCAA
ATTTGCCATCAAGGGCCCGGACGCCCAGGAGGTGTAG

Upstream 100 bases:

>100_bases
CACGTTTGGCAGTATGTTATGGGTGTATCAATATTCATAATTACTTGCCTTTCTTTGTTGGAAATAGTAAATCGCGGTAA
GGATATCCAAGGAGGGCCTA

Downstream 100 bases:

>100_bases
CCATGCTGGAAACAACCTGGTTTGTGCTGTGGGCATTGTTGTGGGCCGTGTACTTTATTCTGGACGGTTTTGACCTGGGC
ATGGGTTCATTGCTGCCCTT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MDVVMLSRLQFAVAVFFHFVFVPLTLGLSVIIAWMETRYVRTGDEFWKKQTKFWGKLFVINFTLGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWNRVGKKLHLASIWLVAIAGNISALWIILANGFMQNPVGYYINE
ANNRAELSSFYDVVTNPYAWGMYAHTVIASWALGGFFVLGVSAWHLLRKSNTEFFSRSFRMVAPFTLIFVLLLALSGDQQ
GKTVAKYQPAKLAAMEAHWETQSDVPFYLLVWPDPENETNTVQALGIPGLLSWIAFDDVHAEVKGLKAFAKEDRPPVLPV
FLTFRTMVALAGIFLVLSAWAFFQRKKENPNPLLLRLLVYNIPLPYIGLMVGWAVTEIGRQPWIVYNLMRTTDAVSPIPA
DNVVISLVAFIGVYSLLGILDIYLLRKFAIKGPDAQEV

Sequences:

>Translated_438_residues
MDVVMLSRLQFAVAVFFHFVFVPLTLGLSVIIAWMETRYVRTGDEFWKKQTKFWGKLFVINFTLGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWNRVGKKLHLASIWLVAIAGNISALWIILANGFMQNPVGYYINE
ANNRAELSSFYDVVTNPYAWGMYAHTVIASWALGGFFVLGVSAWHLLRKSNTEFFSRSFRMVAPFTLIFVLLLALSGDQQ
GKTVAKYQPAKLAAMEAHWETQSDVPFYLLVWPDPENETNTVQALGIPGLLSWIAFDDVHAEVKGLKAFAKEDRPPVLPV
FLTFRTMVALAGIFLVLSAWAFFQRKKENPNPLLLRLLVYNIPLPYIGLMVGWAVTEIGRQPWIVYNLMRTTDAVSPIPA
DNVVISLVAFIGVYSLLGILDIYLLRKFAIKGPDAQEV
>Mature_438_residues
MDVVMLSRLQFAVAVFFHFVFVPLTLGLSVIIAWMETRYVRTGDEFWKKQTKFWGKLFVINFTLGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWNRVGKKLHLASIWLVAIAGNISALWIILANGFMQNPVGYYINE
ANNRAELSSFYDVVTNPYAWGMYAHTVIASWALGGFFVLGVSAWHLLRKSNTEFFSRSFRMVAPFTLIFVLLLALSGDQQ
GKTVAKYQPAKLAAMEAHWETQSDVPFYLLVWPDPENETNTVQALGIPGLLSWIAFDDVHAEVKGLKAFAKEDRPPVLPV
FLTFRTMVALAGIFLVLSAWAFFQRKKENPNPLLLRLLVYNIPLPYIGLMVGWAVTEIGRQPWIVYNLMRTTDAVSPIPA
DNVVISLVAFIGVYSLLGILDIYLLRKFAIKGPDAQEV

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=51.2987012987013, Blast_Score=306, Evalue=2e-84,
Organism=Escherichia coli, GI1787212, Length=503, Percent_Identity=37.375745526839, Blast_Score=300, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49426; Mature: 49426

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVMLSRLQFAVAVFFHFVFVPLTLGLSVIIAWMETRYVRTGDEFWKKQTKFWGKLFVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHEEEEE
NFTLGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWNRV
EEHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GKKLHLASIWLVAIAGNISALWIILANGFMQNPVGYYINEANNRAELSSFYDVVTNPYAW
CCCHHHHHHEEHHHHCCHHEEHHHHHCCHHCCCCCCEEECCCCHHHHHHHHHHHCCCCHH
GMYAHTVIASWALGGFFVLGVSAWHLLRKSNTEFFSRSFRMVAPFTLIFVLLLALSGDQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKTVAKYQPAKLAAMEAHWETQSDVPFYLLVWPDPENETNTVQALGIPGLLSWIAFDDVH
CCEEHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH
AEVKGLKAFAKEDRPPVLPVFLTFRTMVALAGIFLVLSAWAFFQRKKENPNPLLLRLLVY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
NIPLPYIGLMVGWAVTEIGRQPWIVYNLMRTTDAVSPIPADNVVISLVAFIGVYSLLGIL
HCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DIYLLRKFAIKGPDAQEV
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDVVMLSRLQFAVAVFFHFVFVPLTLGLSVIIAWMETRYVRTGDEFWKKQTKFWGKLFVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHEEEEE
NFTLGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWNRV
EEHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
GKKLHLASIWLVAIAGNISALWIILANGFMQNPVGYYINEANNRAELSSFYDVVTNPYAW
CCCHHHHHHEEHHHHCCHHEEHHHHHCCHHCCCCCCEEECCCCHHHHHHHHHHHCCCCHH
GMYAHTVIASWALGGFFVLGVSAWHLLRKSNTEFFSRSFRMVAPFTLIFVLLLALSGDQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKTVAKYQPAKLAAMEAHWETQSDVPFYLLVWPDPENETNTVQALGIPGLLSWIAFDDVH
CCEEHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH
AEVKGLKAFAKEDRPPVLPVFLTFRTMVALAGIFLVLSAWAFFQRKKENPNPLLLRLLVY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
NIPLPYIGLMVGWAVTEIGRQPWIVYNLMRTTDAVSPIPADNVVISLVAFIGVYSLLGIL
HCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DIYLLRKFAIKGPDAQEV
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]