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The map label for this gene is cydB [H]

Identifier: 220905457

GI number: 220905457

Start: 2645062

End: 2646087

Strand: Reverse

Name: cydB [H]

Synonym: Ddes_2195

Alternate gene names: 220905457

Gene position: 2646087-2645062 (Counterclockwise)

Preceding gene: 220905458

Following gene: 220905456

Centisome position: 92.09

GC content: 58.38

Gene sequence:

>1026_bases
ATGCTGGAAACAACCTGGTTTGTGCTGTGGGCATTGTTGTGGGCCGTGTACTTTATTCTGGACGGTTTTGACCTGGGCAT
GGGTTCATTGCTGCCCTTTCTGGGCAAAGACGAAAATGAACGGCGCATCATGTATAACGCCGCCGGGCCGTTCTGGGACG
GCAACGAGGTATGGCTCATCGCCGCTGGCGGTGTGACCTTTGCGGCGTTTCCCAAGGCCTATGCGGTCATGTTCAGCGCC
CTGTACGCGCCGCTGCTGATGCTGCTCTTTGCCCTGATTTTCCGGGCGGTGTCTTTCGAGTTTCGCAGCAAGGTGGAGCA
TACCGCATGGCGCAGCCTGTGGGACGGCGTCCATTTTGTAGCCAATCTCGTCCCCTGCATTCTGCTGGGCGTGGCTTTTG
CCAACCTGTTCATGGGCATCCCCGTGGATGCTCAGGGCGTGTATCACGGCAATCTGCTCGCCCTGCTCAATGTCTACGGA
CTGGCAGGCGGCATATTCTTCCTCTGCATGTTCGTGCTGCACGGGTCCCTGTGGCTGGCCATAAAAAGCCGGGGCGAACT
GCAGATCCGCGCGGTGGCCACGGCCAGCTTTGTGTGGCCCATCATGCTTGTGCTGCTGGTGGCCTTTCTTATCCTTACAG
CGTTTTACACCAAGCTGTACGATAACTATCTGGCCATGCCCGCGCTGCTTGTTCTGCCCCTGGTGGCCCTCGCGGGCCTG
ATCGGTGCGCGCATAATGCTGCATGCGGGCAAACTGTGGCTGGCCTGGGGCTTCAGCGCTCTTTTCATCCTGGGCGTTAC
CTTCTTTGGCGTTATGGGCATGTACCCGGGTATGATCATTTCTTCCATTGACCCGGCCGCCACTGTCACGGCCTTCAACG
GCGCTTCAAGCCAGCTGACGCTCAAGATTATGCTGGGTGTGGCGCTTGTGATGGTTCCCATCGTACTGCTGTACCAGTTC
TGGATGTACCGGCTGTTCTCCGCGCCGGTGCTGCCCAAGGATCTGGATGACGAGCATGCGTACTAG

Upstream 100 bases:

>100_bases
TGGTGGCCTTTATCGGCGTATACTCGCTGCTTGGCATTCTGGACATCTATCTGCTGCGCAAATTTGCCATCAAGGGCCCG
GACGCCCAGGAGGTGTAGCC

Downstream 100 bases:

>100_bases
GGCGTTACCCATGACTGGATAAATGCAAAAGGCCGCGCCCGAGGGTGCGGCCTTTTGCATGCGCAGGCGGCGAAAACCGC
CGGGAGTAAAGCATGAACAG

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MLETTWFVLWALLWAVYFILDGFDLGMGSLLPFLGKDENERRIMYNAAGPFWDGNEVWLIAAGGVTFAAFPKAYAVMFSA
LYAPLLMLLFALIFRAVSFEFRSKVEHTAWRSLWDGVHFVANLVPCILLGVAFANLFMGIPVDAQGVYHGNLLALLNVYG
LAGGIFFLCMFVLHGSLWLAIKSRGELQIRAVATASFVWPIMLVLLVAFLILTAFYTKLYDNYLAMPALLVLPLVALAGL
IGARIMLHAGKLWLAWGFSALFILGVTFFGVMGMYPGMIISSIDPAATVTAFNGASSQLTLKIMLGVALVMVPIVLLYQF
WMYRLFSAPVLPKDLDDEHAY

Sequences:

>Translated_341_residues
MLETTWFVLWALLWAVYFILDGFDLGMGSLLPFLGKDENERRIMYNAAGPFWDGNEVWLIAAGGVTFAAFPKAYAVMFSA
LYAPLLMLLFALIFRAVSFEFRSKVEHTAWRSLWDGVHFVANLVPCILLGVAFANLFMGIPVDAQGVYHGNLLALLNVYG
LAGGIFFLCMFVLHGSLWLAIKSRGELQIRAVATASFVWPIMLVLLVAFLILTAFYTKLYDNYLAMPALLVLPLVALAGL
IGARIMLHAGKLWLAWGFSALFILGVTFFGVMGMYPGMIISSIDPAATVTAFNGASSQLTLKIMLGVALVMVPIVLLYQF
WMYRLFSAPVLPKDLDDEHAY
>Mature_341_residues
MLETTWFVLWALLWAVYFILDGFDLGMGSLLPFLGKDENERRIMYNAAGPFWDGNEVWLIAAGGVTFAAFPKAYAVMFSA
LYAPLLMLLFALIFRAVSFEFRSKVEHTAWRSLWDGVHFVANLVPCILLGVAFANLFMGIPVDAQGVYHGNLLALLNVYG
LAGGIFFLCMFVLHGSLWLAIKSRGELQIRAVATASFVWPIMLVLLVAFLILTAFYTKLYDNYLAMPALLVLPLVALAGL
IGARIMLHAGKLWLAWGFSALFILGVTFFGVMGMYPGMIISSIDPAATVTAFNGASSQLTLKIMLGVALVMVPIVLLYQF
WMYRLFSAPVLPKDLDDEHAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=382, Percent_Identity=35.0785340314136, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1787213, Length=354, Percent_Identity=34.180790960452, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37755; Mature: 37755

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETTWFVLWALLWAVYFILDGFDLGMGSLLPFLGKDENERRIMYNAAGPFWDGNEVWLI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE
AAGGVTFAAFPKAYAVMFSALYAPLLMLLFALIFRAVSFEFRSKVEHTAWRSLWDGVHFV
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVPCILLGVAFANLFMGIPVDAQGVYHGNLLALLNVYGLAGGIFFLCMFVLHGSLWLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IKSRGELQIRAVATASFVWPIMLVLLVAFLILTAFYTKLYDNYLAMPALLVLPLVALAGL
EECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGARIMLHAGKLWLAWGFSALFILGVTFFGVMGMYPGMIISSIDPAATVTAFNGASSQLT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEECCCCCHHH
LKIMLGVALVMVPIVLLYQFWMYRLFSAPVLPKDLDDEHAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLETTWFVLWALLWAVYFILDGFDLGMGSLLPFLGKDENERRIMYNAAGPFWDGNEVWLI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEE
AAGGVTFAAFPKAYAVMFSALYAPLLMLLFALIFRAVSFEFRSKVEHTAWRSLWDGVHFV
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVPCILLGVAFANLFMGIPVDAQGVYHGNLLALLNVYGLAGGIFFLCMFVLHGSLWLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
IKSRGELQIRAVATASFVWPIMLVLLVAFLILTAFYTKLYDNYLAMPALLVLPLVALAGL
EECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGARIMLHAGKLWLAWGFSALFILGVTFFGVMGMYPGMIISSIDPAATVTAFNGASSQLT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEECCCCCHHH
LKIMLGVALVMVPIVLLYQFWMYRLFSAPVLPKDLDDEHAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]