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The map label for this gene is csoS1B [H]

Identifier: 220904629

GI number: 220904629

Start: 1637318

End: 1637605

Strand: Direct

Name: csoS1B [H]

Synonym: Ddes_1361

Alternate gene names: 220904629

Gene position: 1637318-1637605 (Clockwise)

Preceding gene: 220904628

Following gene: 220904630

Centisome position: 56.98

GC content: 63.89

Gene sequence:

>288_bases
ATGACCACTTCTTCCAACGCCCTGGGCATGATCGAAACCCGTGGCCTTGTCGGCGCAGTTGAAGCCGCCGACGCCATGGT
CAAGGCTGCCAACGTTACCCTTATCGGCCGCAGCCAGGTGGGTGGCGGCCTTGTGACCGTTATGGTGCGCGGTGACGTGG
GCGCGGTGAAAGCCGCTGCCGACGCTGGCGCAGCCGCCGCCAAAAAAGTGGGCGAGCTTGTAAGCGTGCACGTTATCCCC
CGCCCGCACAGCGAAGTGGAGATGATCCTGCCCAAGCGCGAAGCCTAA

Upstream 100 bases:

>100_bases
ACTGAAAAAAGTTTTGTAAACCGCGGCCCGGCCCTGCCGTTGTCGCATCAGATCAAAAACTATTTGAACACTATTGTTAA
AAATCAAAGGAGATACCGCT

Downstream 100 bases:

>100_bases
CCCATACCCACGACACGAGTCCGGCGGCGATGCGGCATCCCTACCCCGCCCGCCGCCGGACAGTGGAGCCGAGATGAATA
CTCAAGTGATGAACGAGCAA

Product: microcompartments protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTTSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAAADAGAAAAKKVGELVSVHVIP
RPHSEVEMILPKREA

Sequences:

>Translated_95_residues
MTTSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAAADAGAAAAKKVGELVSVHVIP
RPHSEVEMILPKREA
>Mature_94_residues
TTSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAAADAGAAAAKKVGELVSVHVIPR
PHSEVEMILPKREA

Specific function: Involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=86, Percent_Identity=70.9302325581395, Blast_Score=108, Evalue=9e-26,
Organism=Escherichia coli, GI87082105, Length=84, Percent_Identity=45.2380952380952, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 9533; Mature: 9402

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAAA
CCCCCCCEEEEECCCCEEHHHHHHHHEEECCEEEEECCCCCCEEEEEEEECCCCCEEECC
DAGAAAAKKVGELVSVHVIPRPHSEVEMILPKREA
CCCHHHHHHHCCEEEEEEECCCCCCEEEECCCCCC
>Mature Secondary Structure 
TTSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAAA
CCCCCCEEEEECCCCEEHHHHHHHHEEECCEEEEECCCCCCEEEEEEEECCCCCEEECC
DAGAAAAKKVGELVSVHVIPRPHSEVEMILPKREA
CCCHHHHHHHCCEEEEEEECCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934888; 9696760 [H]