| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904547
Identifier: 220904547
GI number: 220904547
Start: 1506703
End: 1507560
Strand: Reverse
Name: 220904547
Synonym: Ddes_1278
Alternate gene names: NA
Gene position: 1507560-1506703 (Counterclockwise)
Preceding gene: 220904551
Following gene: 220904546
Centisome position: 52.47
GC content: 56.18
Gene sequence:
>858_bases ATGTCTTCAGCTTTTCCACAAAACGGTTTCCAGTCTTTAGGGTTGGGGCTTTCGCCCTGTCCCAATGACACCTATATTTT TCACGCTCTTCTGCACGGCCTTGTACCGGCCCCGGCAGCTCTGAAACCCCATATGGCTGATGTGGAAGAACTGAATACCC TTGCCCGTCGGGGACAGCTTGAGGTGACCAAGATATCCCTTGGTGTGGTAGCTGAAATTATGGATAGCTACGCCCTGCTG TCTTCCGGCGCTGCACTTGGCTGGGGATGCGGACCACTGGTTGTTGCGCGAAAAAAACTTTCGCCCCAGGAATGGAGAAA CGCCACTGTGGCAGTGCCGGGGGTGTTGACCACTGCCAACCTTCTGCTTACCTTGCATGGCGGTTTTCAAGGGGCACGGC GCGAAATGCTTTTCAGCGATGTGATGCCCGCCGTGGCGCGGGGTGAAGCGGACATGGGGCTTGTTATTCATGAGGGGCGC TTTACTTACGAAAAACTGGGTTTGACCAGGGTGCTTGATCTGGGCCAATGGTGGGAAAGCGAATTTCATTTGCCCCTGCC GCTGGGAGCCATTGCTGTGCGGCGTGATGTGCCGTTGCCGCTCGCGCGGCGCGTACAGGGAGCCATTACCGGCAGCCTGG CACACGCCAACGCGCACCCCGAAGCCTCAAGGCAGTACGTGTGCGCACATGCGCAGGAAATGACAGACAGCGTTACACAG GCACATATCAAAACATTTGTGACGAATTTCAGCCTTGACCTTGGTGGTGAAGGGCGTAGGGCCATCGAGCATCTTGTAGG TCGGGCTGCGGAGCTTTCAGGAAAAAAACTGCCGGCGGAAGGGCTGTTTTTACGCTAA
Upstream 100 bases:
>100_bases ATGCAGCGTCTAACATGATGAAATCCTGTGGGGTTGATTGGGCCGGAAGGGCCGCAAGCAGAGTAGGCCGCCCGCCGCAA GCTGTCAATGTGAGGAATAT
Downstream 100 bases:
>100_bases GATATACTGAAAAGTACCGTATTTTTACAACAAGGCGGATGCGGCCGGGAGGCGCGTTAGGCGCAGCACAACGTGAGAAA ATCGAAGCGGTTTACTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSSAFPQNGFQSLGLGLSPCPNDTYIFHALLHGLVPAPAALKPHMADVEELNTLARRGQLEVTKISLGVVAEIMDSYALL SSGAALGWGCGPLVVARKKLSPQEWRNATVAVPGVLTTANLLLTLHGGFQGARREMLFSDVMPAVARGEADMGLVIHEGR FTYEKLGLTRVLDLGQWWESEFHLPLPLGAIAVRRDVPLPLARRVQGAITGSLAHANAHPEASRQYVCAHAQEMTDSVTQ AHIKTFVTNFSLDLGGEGRRAIEHLVGRAAELSGKKLPAEGLFLR
Sequences:
>Translated_285_residues MSSAFPQNGFQSLGLGLSPCPNDTYIFHALLHGLVPAPAALKPHMADVEELNTLARRGQLEVTKISLGVVAEIMDSYALL SSGAALGWGCGPLVVARKKLSPQEWRNATVAVPGVLTTANLLLTLHGGFQGARREMLFSDVMPAVARGEADMGLVIHEGR FTYEKLGLTRVLDLGQWWESEFHLPLPLGAIAVRRDVPLPLARRVQGAITGSLAHANAHPEASRQYVCAHAQEMTDSVTQ AHIKTFVTNFSLDLGGEGRRAIEHLVGRAAELSGKKLPAEGLFLR >Mature_284_residues SSAFPQNGFQSLGLGLSPCPNDTYIFHALLHGLVPAPAALKPHMADVEELNTLARRGQLEVTKISLGVVAEIMDSYALLS SGAALGWGCGPLVVARKKLSPQEWRNATVAVPGVLTTANLLLTLHGGFQGARREMLFSDVMPAVARGEADMGLVIHEGRF TYEKLGLTRVLDLGQWWESEFHLPLPLGAIAVRRDVPLPLARRVQGAITGSLAHANAHPEASRQYVCAHAQEMTDSVTQA HIKTFVTNFSLDLGGEGRRAIEHLVGRAAELSGKKLPAEGLFLR
Specific function: Unknown
COG id: COG2107
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30662; Mature: 30531
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAFPQNGFQSLGLGLSPCPNDTYIFHALLHGLVPAPAALKPHMADVEELNTLARRGQL CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC EVTKISLGVVAEIMDSYALLSSGAALGWGCGPLVVARKKLSPQEWRNATVAVPGVLTTAN EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCEEECCCHHHHHE LLLTLHGGFQGARREMLFSDVMPAVARGEADMGLVIHEGRFTYEKLGLTRVLDLGQWWES EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC EFHLPLPLGAIAVRRDVPLPLARRVQGAITGSLAHANAHPEASRQYVCAHAQEMTDSVTQ CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AHIKTFVTNFSLDLGGEGRRAIEHLVGRAAELSGKKLPAEGLFLR HHHHHHHHHCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SSAFPQNGFQSLGLGLSPCPNDTYIFHALLHGLVPAPAALKPHMADVEELNTLARRGQL CCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC EVTKISLGVVAEIMDSYALLSSGAALGWGCGPLVVARKKLSPQEWRNATVAVPGVLTTAN EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCEEECCCHHHHHE LLLTLHGGFQGARREMLFSDVMPAVARGEADMGLVIHEGRFTYEKLGLTRVLDLGQWWES EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC EFHLPLPLGAIAVRRDVPLPLARRVQGAITGSLAHANAHPEASRQYVCAHAQEMTDSVTQ CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AHIKTFVTNFSLDLGGEGRRAIEHLVGRAAELSGKKLPAEGLFLR HHHHHHHHHCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA