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The map label for this gene is comL [H]

Identifier: 220904471

GI number: 220904471

Start: 1412401

End: 1413132

Strand: Direct

Name: comL [H]

Synonym: Ddes_1201

Alternate gene names: 220904471

Gene position: 1412401-1413132 (Clockwise)

Preceding gene: 220904470

Following gene: 220904472

Centisome position: 49.15

GC content: 48.36

Gene sequence:

>732_bases
ATGCATAAAAAATTGTTACGCTCCATCTTGCTTGTCATGAGCATGCTCATGGCTTCCGGCTGCGGTATTATTGATATGAT
ATACCTGCCGCCTGCCGAAGACACTGCGCAGGAAATTTTTGAGGCCGCCAACGACGCCATGAGTGAAAAAAACTATGTGC
GGGCAGTGGAGCTATACAATAAACTGCGCGATACCTATCCCTTCAGCCCTTATACCATTGATGCTGAACTTTCTTTGGGC
GATGCGTATTTCCTTGACGAGGAATATGAACTCGCTTCTGAAAGTTACAAAGATTTTGAATCATTGCATCCCAGGCATGA
GGCCATCCCTTACGTGCTGTATCAAACGGGCATGTCCCTGCTGAAACAGTTCCGTTCCATTGACAGGGCGACAACGGAAT
TGCAGGAAGCATACGATTATTTCAATCGTCTGCACCAGATGTATCCGGATTCTCCCTATGCCAAGGGCGCGGAAGAGCAC
ATGATAACCTGCCGGAAACTTATGGCGGAGCACGAGCTTTATATTGCGGACGTGTTCTGGCATATGAAAAAATACGGCCC
GGCCTGGCATCGCTACGAATTTATCGTAAAGAATTTCCAGGACGTGCCAGAAGTGGCTGAGCATGCCAAAGAAAAAAGCC
TTGCCGCCTACCATTACTACAAGGAAGAGCAGGCCAAGGAGACACGGCAGAAACGTCAAGGGTCCTGGCGTGAATGGTTC
AAATGGCTATAG

Upstream 100 bases:

>100_bases
GCCGGAGACATACGCTCAAAGCTTTGCCGCCAGGTCATCACTGCCGCCGGCGATGGCGCAACCGCCGCTCAAGCGGCATT
TGTCTTTCTGGAACAGCTCC

Downstream 100 bases:

>100_bases
GAACTTAAAGATAAAAGCCCCTCCGGGGGCTTTTTTTACTCGTGGGGTCTGTTATGTCCAGTTCGCTGGAAGCCAGTGCT
GAAAAAAATCGTGCGGCGCT

Product: outer membrane assembly lipoprotein YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MHKKLLRSILLVMSMLMASGCGIIDMIYLPPAEDTAQEIFEAANDAMSEKNYVRAVELYNKLRDTYPFSPYTIDAELSLG
DAYFLDEEYELASESYKDFESLHPRHEAIPYVLYQTGMSLLKQFRSIDRATTELQEAYDYFNRLHQMYPDSPYAKGAEEH
MITCRKLMAEHELYIADVFWHMKKYGPAWHRYEFIVKNFQDVPEVAEHAKEKSLAAYHYYKEEQAKETRQKRQGSWREWF
KWL

Sequences:

>Translated_243_residues
MHKKLLRSILLVMSMLMASGCGIIDMIYLPPAEDTAQEIFEAANDAMSEKNYVRAVELYNKLRDTYPFSPYTIDAELSLG
DAYFLDEEYELASESYKDFESLHPRHEAIPYVLYQTGMSLLKQFRSIDRATTELQEAYDYFNRLHQMYPDSPYAKGAEEH
MITCRKLMAEHELYIADVFWHMKKYGPAWHRYEFIVKNFQDVPEVAEHAKEKSLAAYHYYKEEQAKETRQKRQGSWREWF
KWL
>Mature_243_residues
MHKKLLRSILLVMSMLMASGCGIIDMIYLPPAEDTAQEIFEAANDAMSEKNYVRAVELYNKLRDTYPFSPYTIDAELSLG
DAYFLDEEYELASESYKDFESLHPRHEAIPYVLYQTGMSLLKQFRSIDRATTELQEAYDYFNRLHQMYPDSPYAKGAEEH
MITCRKLMAEHELYIADVFWHMKKYGPAWHRYEFIVKNFQDVPEVAEHAKEKSLAAYHYYKEEQAKETRQKRQGSWREWF
KWL

Specific function: Required for efficient transformation of Neisseria gonorrhoeae by species-related DNA [H]

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=201, Percent_Identity=24.3781094527363, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28896; Mature: 28896

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKLLRSILLVMSMLMASGCGIIDMIYLPPAEDTAQEIFEAANDAMSEKNYVRAVELYN
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRDTYPFSPYTIDAELSLGDAYFLDEEYELASESYKDFESLHPRHEAIPYVLYQTGMSL
HHHHCCCCCCEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LKQFRSIDRATTELQEAYDYFNRLHQMYPDSPYAKGAEEHMITCRKLMAEHELYIADVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HMKKYGPAWHRYEFIVKNFQDVPEVAEHAKEKSLAAYHYYKEEQAKETRQKRQGSWREWF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KWL
HCC
>Mature Secondary Structure
MHKKLLRSILLVMSMLMASGCGIIDMIYLPPAEDTAQEIFEAANDAMSEKNYVRAVELYN
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRDTYPFSPYTIDAELSLGDAYFLDEEYELASESYKDFESLHPRHEAIPYVLYQTGMSL
HHHHCCCCCCEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LKQFRSIDRATTELQEAYDYFNRLHQMYPDSPYAKGAEEHMITCRKLMAEHELYIADVFW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HMKKYGPAWHRYEFIVKNFQDVPEVAEHAKEKSLAAYHYYKEEQAKETRQKRQGSWREWF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KWL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8830266 [H]