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The map label for this gene is citD [H]

Identifier: 21910368

GI number: 21910368

Start: 885398

End: 885706

Strand: Direct

Name: citD [H]

Synonym: SpyM3_0832

Alternate gene names: 21910368

Gene position: 885398-885706 (Clockwise)

Preceding gene: 21910367

Following gene: 21910369

Centisome position: 46.59

GC content: 41.42

Gene sequence:

>309_bases
ATGGATATTAAACAAACTGCCGTTTCTGGTTCACTTGAATCAAGTGACCTAATGATTACAGTATCCCCTAATGACGAGAA
AACCATTACAATAACCCTAGACAGTAGTGTTGAAAAACAATTTGGCAATCACATTCGTCAACTCATTCATCAAACCCTAG
TGAATTTGAAGGTGACGACTGCCAAAGTAGAGGCTGTTGATAAAGGCGCTTTAGATTGCACCATTCAAGCGAGAACCATC
GCAGCTGTTCATCGCGCAGCTGGTGTTGACCAATACGATTGGAAGGAGATTGACTCATGGAACGTTTAA

Upstream 100 bases:

>100_bases
TCGTGTTAGGAATTCTCTATCTTGTCGCAGAGATCCTGATCAAACTTTTCCCAGTTAGTAAATAACAATATCATTTAAGA
AAATCAAGGAGGTAAACGCA

Downstream 100 bases:

>100_bases
GAAGAACAATGATGTTTGTGCCAGGTGCCAATGCTGCTATGCTTCGAGATGCTCCTTTGTTTGGTGCTGATTCAATCATG
TTTGACTTGGAAGATTCTGT

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain [H]

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MDIKQTAVSGSLESSDLMITVSPNDEKTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTTAKVEAVDKGALDCTIQARTI
AAVHRAAGVDQYDWKEIDSWNV

Sequences:

>Translated_102_residues
MDIKQTAVSGSLESSDLMITVSPNDEKTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTTAKVEAVDKGALDCTIQARTI
AAVHRAAGVDQYDWKEIDSWNV
>Mature_102_residues
MDIKQTAVSGSLESSDLMITVSPNDEKTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTTAKVEAVDKGALDCTIQARTI
AAVHRAAGVDQYDWKEIDSWNV

Specific function: Covalent carrier of the coenzyme of citrate lyase [H]

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family [H]

Homologues:

Organism=Escherichia coli, GI1786834, Length=96, Percent_Identity=43.75, Blast_Score=86, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006495
- InterPro:   IPR009662
- ProDom:   PD015389 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: 4.1.3.6

Molecular weight: Translated: 11225; Mature: 11225

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKQTAVSGSLESSDLMITVSPNDEKTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTT
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEE
AKVEAVDKGALDCTIQARTIAAVHRAAGVDQYDWKEIDSWNV
EEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDIKQTAVSGSLESSDLMITVSPNDEKTITITLDSSVEKQFGNHIRQLIHQTLVNLKVTT
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEEEE
AKVEAVDKGALDCTIQARTIAAVHRAAGVDQYDWKEIDSWNV
EEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]