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The map label for this gene is gcdB [H]

Identifier: 21910367

GI number: 21910367

Start: 884140

End: 885210

Strand: Direct

Name: gcdB [H]

Synonym: SpyM3_0831

Alternate gene names: 21910367

Gene position: 884140-885210 (Clockwise)

Preceding gene: 161485744

Following gene: 21910368

Centisome position: 46.52

GC content: 41.83

Gene sequence:

>1071_bases
ATGATGGTCATCGGTGCCCTCTTAATGTATCTAGGAATTAAAAAAGAATACGAACCAACCTTACTTGTCCCCATGGGACT
TGGAACCATTCTCGTTAACTTCCCTGGTTCAGGAGTTTTAACCCAAGTGGTTAACGGAGTCGAGCAAGAAGGGGTTTTTG
AGGCTCTCTTCAATTTTGGGATTGGAACAGAACTTTTCCCACTGTTGATTTTCATTGGTATTGGCGCCATGATTGACTTT
GGTCCCTTGCTTCAAAACCCATTCATGCTCTTGTTTGGTGCTGCAGCGCAATTTGGGATTTTCTTTGTTGTTGTTGTTGC
TGTACTGGCTGGCTTTGACATTAAAGAAGCAGCTTCAATCGGCATTATCGGAGCAGCAGATGGACCGACTTCTATCTTTG
TTGCCAACCAACTGGCCAAGGATTTACTGGGTCCAATTACGGTTGCAGCCTATTCTTACATGGCTCTGGTTCCTATTATC
CAACCATTTGCCATTAAATTAGTGACAACGAAAAAAGAGCGCCGTATCCGTATGACTTACAAAGCTGAGAATGTATCTCA
AATGACTAAAATCTTATTCCCAATCATCATTACCTTAGTAGCAGGGTTCATCGCCCCAATTTCTCTACCTTTAGTTGGCT
TTTTGATGTTCGGTAACTTATTACGTGAGTGCGGTGTGCTCGATCGCCTGTCACAAACTGCTCAAAATGAATTGGTAAAC
ATTATTAGTATCTTGCTTGGATTGACCATCTCTATTAAAATGCAGGCAGACCTGTTCTTAAATGTACAGACACTCTTAAT
TATCGTCTTTGGTTTACTTGCTTTTATCATGGATTCTATCGGTGGGGTCATGTTTGCCAAATTTCTCAATCTCTTCCGAA
AAGAGAAGATTAATCCAATGATTGGCGCTGCGGGTATTTCAGCTTTTCCAATGTCAAGTCGTGTCATTCAAAAAATGGCA
ACAGATGAAGACCCGCAAAACTTTATCCTCATGTATGCTGTAGGTGCCAATGTCTCTGGCCAAATCGCCTCTGTTATCGC
AGGTGGTTTGTTGCTAGCTTACTTTAGCTAA

Upstream 100 bases:

>100_bases
GTTAATAGTACTATAACTAGAATAAATAGACAGAAAAGGAAGTGAATTTGTGGACACTTTAATCGCAGGAATAACCTCCA
TCACCATTCCTCAAATTGTT

Downstream 100 bases:

>100_bases
GAAAGGAAGGAAAGCTTATGACAATTAATATGGACCATTTGATTAGTTCCTTTGAGCTAATGGCGCTTGGTATGGCAGGT
GTCTTTATCGTGTTAGGAAT

Product: putative decarboxylase beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGTELFPLLIFIGIGAMIDF
GPLLQNPFMLLFGAAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPII
QPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGVLDRLSQTAQNELVN
IISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMA
TDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS

Sequences:

>Translated_356_residues
MMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGTELFPLLIFIGIGAMIDF
GPLLQNPFMLLFGAAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPII
QPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGVLDRLSQTAQNELVN
IISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMA
TDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS
>Mature_356_residues
MMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFGIGTELFPLLIFIGIGAMIDF
GPLLQNPFMLLFGAAAQFGIFFVVVVAVLAGFDIKEAASIGIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPII
QPFAIKLVTTKKERRIRMTYKAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGVLDRLSQTAQNELVN
IISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPMIGAAGISAFPMSSRVIQKMA
TDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 38262; Mature: 38262

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFG
CHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHCC
IGTELFPLLIFIGIGAMIDFGPLLQNPFMLLFGAAAQFGIFFVVVVAVLAGFDIKEAASI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCE
GIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPIIQPFAIKLVTTKKERRIRMTY
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEE
KAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGVLDRLSQTAQNELVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPM
HHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
IGAAGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS
HCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMVIGALLMYLGIKKEYEPTLLVPMGLGTILVNFPGSGVLTQVVNGVEQEGVFEALFNFG
CHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHCC
IGTELFPLLIFIGIGAMIDFGPLLQNPFMLLFGAAAQFGIFFVVVVAVLAGFDIKEAASI
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCE
GIIGAADGPTSIFVANQLAKDLLGPITVAAYSYMALVPIIQPFAIKLVTTKKERRIRMTY
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEE
KAENVSQMTKILFPIIITLVAGFIAPISLPLVGFLMFGNLLRECGVLDRLSQTAQNELVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IISILLGLTISIKMQADLFLNVQTLLIIVFGLLAFIMDSIGGVMFAKFLNLFRKEKINPM
HHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
IGAAGISAFPMSSRVIQKMATDEDPQNFILMYAVGANVSGQIASVIAGGLLLAYFS
HCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]