Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
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Accession | NC_004070 |
Length | 1,900,521 |
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The map label for this gene is rnhB [H]
Identifier: 21910354
GI number: 21910354
Start: 870741
End: 871532
Strand: Direct
Name: rnhB [H]
Synonym: SpyM3_0818
Alternate gene names: 21910354
Gene position: 870741-871532 (Clockwise)
Preceding gene: 21910353
Following gene: 21910355
Centisome position: 45.82
GC content: 41.92
Gene sequence:
>792_bases ATGCCGACTAGTATTAAAGCTATTAAAGAAAGCTTAGAGGCCGTTACTAGCCTCTTGGACCCCCTCTTTCAAGAATTGGC AACCGACACTAGGTCAGGCGTCCAAAAAGCGCTAAAAAGTCGACAAAAGGCTATTCAGGCCGATTTAGCAGAGGAAGAAC GATTAGAAGCCATGCTTTCTTATGAAAAAGCGCTTTATAAAGAAGGCTACCAAGCCATTGCAGGTATTGATGAGGTGGGA CGTGGCCCCCTAGCAGGTCCCGTTGTCGCAGCATGTGTCATCTTACCTCAACATTGCAAAATTAAAGGTCTGAATGATTC TAAAAAAATCCCTAAAGCTAAGCATGAGACCATTTATCAGGCAGTGAAAGAAAAGGCTTTGGCTATCGGTATCGGTATTA TTGACAATCAGCTGATTGATGAGGTCAACATTTATGAAGCAACCAAACTAGCTATGCTAGAAGCCATTAAACAGTTGGAG GGCCAACTCACACAACCAGATTATCTCTTGATTGATGCCATGACATTGGATATTGCTATTTCGCAGCAGTCTATTCTTAA AGGCGATGCCAATTCCTTGTCTATTGCAGCAGCATCAATTGTAGCTAAGGTCACCAGAGATCAGATGATGGCTAACTATG ATCGCATTTTTCCTGGTTATGGCTTTGCTAAAAATGCAGGCTATGGCACCAAAGAACATTTACAGGAATTAAAAGCTTAC GGCATAACGCCTATCCATCGTAAAAGTTTTGAACCTGTTAAATCCATGTGCTGCGATTCAACTAATCCTTAA
Upstream 100 bases:
>100_bases GGCTTTAAAGATGATTACGACCGTTTCTACAGTTTATTCGTTAAGGAAGTTCGTGATGGTAAATTAGGTCAATACACCTT AGATCAGGTGGGAGATATGG
Downstream 100 bases:
>100_bases AAAGTTCTGTTTTTAGCAGAATTTTTTTCTTTTTTACGAATAAATGAAGTAAGGAGGTAACTTAGTGAATCATTTTGAAC TTTATAAGCTAAAGAAAGCT
Product: ribonuclease HII
Products: NA
Alternate protein names: RNase HII [H]
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MPTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKAIQADLAEEERLEAMLSYEKALYKEGYQAIAGIDEVG RGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLE GQLTQPDYLLIDAMTLDIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELKAY GITPIHRKSFEPVKSMCCDSTNP
Sequences:
>Translated_263_residues MPTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKAIQADLAEEERLEAMLSYEKALYKEGYQAIAGIDEVG RGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLE GQLTQPDYLLIDAMTLDIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELKAY GITPIHRKSFEPVKSMCCDSTNP >Mature_262_residues PTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKAIQADLAEEERLEAMLSYEKALYKEGYQAIAGIDEVGR GPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEG QLTQPDYLLIDAMTLDIAISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELKAYG ITPIHRKSFEPVKSMCCDSTNP
Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]
COG id: COG0164
COG function: function code L; Ribonuclease HII
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RNase HII family [H]
Homologues:
Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=47.5675675675676, Blast_Score=160, Evalue=5e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022898 - InterPro: IPR001352 - InterPro: IPR012337 [H]
Pfam domain/function: PF01351 RNase_HII [H]
EC number: =3.1.26.4 [H]
Molecular weight: Translated: 28710; Mature: 28578
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKAIQADLAEEERLEAMLS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETIYQ HHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCCEECCCCCHHCCCCHHHHHHHH AVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDIAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHH SQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELKAY HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH GITPIHRKSFEPVKSMCCDSTNP CCCCHHHCCHHHHHHHHCCCCCC >Mature Secondary Structure PTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKAIQADLAEEERLEAMLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETIYQ HHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCCEECCCCCHHCCCCHHHHHHHH AVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDIAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHH SQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELKAY HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH GITPIHRKSFEPVKSMCCDSTNP CCCCHHHCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296 [H]