Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
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Accession | NC_004070 |
Length | 1,900,521 |
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The map label for this gene is prfA [H]
Identifier: 21910335
GI number: 21910335
Start: 850585
End: 851664
Strand: Direct
Name: prfA [H]
Synonym: SpyM3_0799
Alternate gene names: 21910335
Gene position: 850585-851664 (Clockwise)
Preceding gene: 21910334
Following gene: 21910336
Centisome position: 44.76
GC content: 36.94
Gene sequence:
>1080_bases ATGAATATTTATGATCAATTGCAGGCAGTTGAAGATCGTTATGAAGAGTTAGGTGAGTTACTTAGTGATCCAGATGTTGT TTCAGATACAAAGCGATTTATGGAATTATCACGTGAAGAAGCTAATACTCGAGAAACTGTCACAGCTTATAGAGAATATA AGCAAGTCATTCAAACCATTTCAGATGCTGAAGAAATGATCAAAGATGCCAGTGGTGATCCTGAATTAGAAGAAATGGCT AAAGAAGAACTTAAAGAATCAAAAGCAGCTAAAGAAGAGTATGAAGAAAAATTAAAAATTCTTCTATTACCTAAAGATCC TAACGATGATAAAAATATTATTTTAGAAATTCGTGGTGCTGCTGGTGGCGATGAGGCAGCGCTTTTTGCTGGTGATCTTT TAACAATGTATCAAAAATATGCTGAAACTCAAGGATGGCGTTTTGAAGTTATGGAATCATCCGTTAATGGTGTTGGTGGT ATTAAAGAAGTGGTTGCCATGGTTTCTGGTCAGTCAGTTTATTCTAAGCTTAAATATGAATCAGGAGCTCATCGTGTTCA ACGTGTCCCAGTGACAGAGAGTCAGGGTCGTGTTCATACTTCAACTGCAACTGTTTTGGTAATGCCAGAAGTTGAAGAAG TAGAATACGACATTGATCCTAAAGACTTACGTATTGATATTTACCACGCGTCTGGTGCTGGTGGTCAGAACGTCAATAAA GTTGCTACTGCAGTTCGTATGGTACACATTCCTACAGGAATCAAAGTTGAAATGCAAGAAGAGCGTACTCAGCAAAAAAA CCGTGATAAAGCGATGAAAATCATTCGTGCTCGTGTTGCTGACCATTTTGCGCAAATTGCTCAAGATGAGCAAGATGCTG AACGTAAATCAACAGTTGGTACTGGTGATCGTTCAGAACGTATTCGTACTTATAATTTCCCACAAAATCGTGTAACAGAT CATCGTATTGGTTTGACACTTCAAAAATTAGATACTATTTTATCTGGAAAAATGGATGAAGTTATTGATGCACTCGTTAT GTATGATCAGACAAAGAAATTAGAATCTCTCAATAACTAA
Upstream 100 bases:
>100_bases CAAATTGGTGGTAATGAAACCTATATCCCAGTTTGTCGAAAACATTATTTTAATCCAGAGATTTAAAAGGTAATCAGTTT TAAAGGAGATACAAAGAAAA
Downstream 100 bases:
>100_bases TGAACTATGCTACATTAATCAGAACTTATGAAGATAAACTAGAACAAATAGATGAGGATCGCGAAAATCTCGCCTATGTT TTTAGAGAAATCAAAGAATG
Product: peptide chain release factor 1
Products: NA
Alternate protein names: RF-1 [H]
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTISDAEEMIKDASGDPELEEMA KEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGG IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD HRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLNN
Sequences:
>Translated_359_residues MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTISDAEEMIKDASGDPELEEMA KEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGG IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD HRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLNN >Mature_359_residues MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTISDAEEMIKDASGDPELEEMA KEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGG IKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTD HRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLNN
Specific function: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA [H]
COG id: COG0216
COG function: function code J; Protein chain release factor A
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic/mitochondrial release factor family [H]
Homologues:
Organism=Homo sapiens, GI166795303, Length=292, Percent_Identity=43.4931506849315, Blast_Score=255, Evalue=4e-68, Organism=Homo sapiens, GI34577120, Length=349, Percent_Identity=37.8223495702006, Blast_Score=240, Evalue=1e-63, Organism=Homo sapiens, GI166795305, Length=196, Percent_Identity=41.8367346938776, Blast_Score=174, Evalue=1e-43, Organism=Escherichia coli, GI1787462, Length=360, Percent_Identity=49.4444444444444, Blast_Score=355, Evalue=3e-99, Organism=Escherichia coli, GI2367172, Length=349, Percent_Identity=35.8166189111748, Blast_Score=195, Evalue=4e-51, Organism=Caenorhabditis elegans, GI17542784, Length=288, Percent_Identity=39.2361111111111, Blast_Score=188, Evalue=3e-48, Organism=Saccharomyces cerevisiae, GI6321295, Length=318, Percent_Identity=41.8238993710692, Blast_Score=247, Evalue=2e-66, Organism=Drosophila melanogaster, GI19921226, Length=344, Percent_Identity=37.5, Blast_Score=222, Evalue=3e-58,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005139 - InterPro: IPR000352 - InterPro: IPR004373 [H]
Pfam domain/function: PF03462 PCRF; PF00472 RF-1 [H]
EC number: NA
Molecular weight: Translated: 40583; Mature: 40583
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS00745 RF_PROK_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECC AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHCCHHHHHHHHHC SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK CCCHHHEECCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCEEEEEEECCCCCCCCHHH VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG HHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLNN CCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECC AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHCCHHHHHHHHHC SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK CCCHHHEECCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCEEEEEEECCCCCCCCHHH VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG HHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLNN CCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA