Click here to switch to the map view.

The map label for this gene is ytfJ [H]

Identifier: 218930542

GI number: 218930542

Start: 3940197

End: 3940760

Strand: Direct

Name: ytfJ [H]

Synonym: YPO3528

Alternate gene names: 218930542

Gene position: 3940197-3940760 (Clockwise)

Preceding gene: 218930540

Following gene: 218930544

Centisome position: 84.67

GC content: 45.92

Gene sequence:

>564_bases
ATGATAAAAAATAGCCTGCTTATAATATCGCTGATATTCACACCGCTACTGGTATCGGCCCATAACATTCAGGACAACCA
ACGCGTGCCGCCAGTTGGTGTCCGCGATAAAGGTGAGTTGGATTATGATAAGACCACCAATCAGTTTAACTATAAAAACT
GGAATAGCTCACAATTGCCCGGCAAAACCCGCGTCATTCAACACATTGCTGGCCGTACCTCAGCCAAAGAAATGAATGCC
CCGCTGATTGATGCCATCAAGCAAGCCAATCTGCCACGCGAACGTTACCAAACGACGACCATCGTCAATACTGATGATGC
AATCATCGGGACAGCCATGTTTGTGCGTAACAGCATTGAAAGCAGTAAACGTGAATTTCCTTGGTCGCAATTTATTATCG
ACAGTAAGGGAAATGTGGCAAAAGCTTGGGGGTTAACGGAGAAAAGCTCTGCCATTGTGGTGCTGGATCCACAAGGAAAT
GTCAAATTTGTAAAAGATGGAGCACTGACATCAGCAGAGGTGCAGCAGGTCATCGACCAACTGCACCAACTTGTGCAGCA
ATAA

Upstream 100 bases:

>100_bases
ACAGACCTCTGATCTGGACCTATTATTGAAAAACTTACCTACTTTCAGGGGTAAGTGCCCTACGTCATTATCTACGCGGA
TATCTCTACAAGGACATAAT

Downstream 100 bases:

>100_bases
CGCTAAAATAACGAAACTCTGAAACCGGGGTTCAAGAAAGATTCACGTGGGGTATAAGACAGTGTCTTTCCCTGCCAATC
GTGTACTTGCGCCCCGGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MIKNSLLIISLIFTPLLVSAHNIQDNQRVPPVGVRDKGELDYDKTTNQFNYKNWNSSQLPGKTRVIQHIAGRTSAKEMNA
PLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFVRNSIESSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLDPQGN
VKFVKDGALTSAEVQQVIDQLHQLVQQ

Sequences:

>Translated_187_residues
MIKNSLLIISLIFTPLLVSAHNIQDNQRVPPVGVRDKGELDYDKTTNQFNYKNWNSSQLPGKTRVIQHIAGRTSAKEMNA
PLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFVRNSIESSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLDPQGN
VKFVKDGALTSAEVQQVIDQLHQLVQQ
>Mature_187_residues
MIKNSLLIISLIFTPLLVSAHNIQDNQRVPPVGVRDKGELDYDKTTNQFNYKNWNSSQLPGKTRVIQHIAGRTSAKEMNA
PLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFVRNSIESSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLDPQGN
VKFVKDGALTSAEVQQVIDQLHQLVQQ

Specific function: Unknown

COG id: COG3054

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0045 [H]

Homologues:

Organism=Escherichia coli, GI1790662, Length=186, Percent_Identity=59.6774193548387, Blast_Score=234, Evalue=3e-63,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006513 [H]

Pfam domain/function: PF09695 YtfJ_HI0045 [H]

EC number: NA

Molecular weight: Translated: 20887; Mature: 20887

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNSLLIISLIFTPLLVSAHNIQDNQRVPPVGVRDKGELDYDKTTNQFNYKNWNSSQLP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKTRVIQHIAGRTSAKEMNAPLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFVRNSIE
CHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHCEEEEECCCCHHHHHHHHHHHHHH
SSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLDPQGNVKFVKDGALTSAEVQQVIDQ
HHHHCCCHHHEEEECCCCEEECCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHH
LHQLVQQ
HHHHHHC
>Mature Secondary Structure
MIKNSLLIISLIFTPLLVSAHNIQDNQRVPPVGVRDKGELDYDKTTNQFNYKNWNSSQLP
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKTRVIQHIAGRTSAKEMNAPLIDAIKQANLPRERYQTTTIVNTDDAIIGTAMFVRNSIE
CHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHCEEEEECCCCHHHHHHHHHHHHHH
SSKREFPWSQFIIDSKGNVAKAWGLTEKSSAIVVLDPQGNVKFVKDGALTSAEVQQVIDQ
HHHHCCCHHHEEEECCCCEEECCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHH
LHQLVQQ
HHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7764507; 9298646; 10493123 [H]