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The map label for this gene is nifU [H]

Identifier: 218929954

GI number: 218929954

Start: 3238530

End: 3238916

Strand: Reverse

Name: nifU [H]

Synonym: YPO2895

Alternate gene names: 218929954

Gene position: 3238916-3238530 (Counterclockwise)

Preceding gene: 218929955

Following gene: 218929953

Centisome position: 69.6

GC content: 46.51

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAAGTAATCGATCATTACGAAAATCCACGCAACGTGGGGTCGTTCGACAGTCAAGACCCTACTAT
TGGTAGTGGCATGGTTGGCGCACCCGCTTGTGGTGATGTCATGAAGTTGCAGATCAAAGTGAATGAAGCCGGTATTATTG
AAGACGCCCGCTTTAAGACTTATGGTTGCGGTTCTGCCATCGCCTCCAGCTCTTTAGTCACTGAATGGATGAAAGGCAAG
TCTCTCGATCAGGCTGAAGCCATCAAAAATACTCAGATTGCTGAAGAACTGGAGTTACCGCCAGTCAAGATTCACTGCTC
AATTTTGGCAGAAGATGCTATTAAAGCCGCAATCGCCGACTACAAAAGCAAGCATACTGCCAAGTAA

Upstream 100 bases:

>100_bases
TTTATCCCCATTGTGGGATATGTTCAAGCAGGGCGTGGATATCAGCAGCATTGAATGGTCCCATCATTAATTCCACACTT
TAAGACTCAGGAGAAATCAC

Downstream 100 bases:

>100_bases
TTGTGATATGTGATTTTTATATCCAAGTGACTTCGAGATGCAGCTAACACTCGTGCATCTTGAAGGACGACAGGTATATA
TAGGTTATTAATAATTAGCT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGSFDSQDPTIGSGMVGAPACGDVMKLQIKVNEAGIIEDARFKTYGCGSAIASSSLVTEWMKGK
SLDQAEAIKNTQIAEELELPPVKIHCSILAEDAIKAAIADYKSKHTAK

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGSFDSQDPTIGSGMVGAPACGDVMKLQIKVNEAGIIEDARFKTYGCGSAIASSSLVTEWMKGK
SLDQAEAIKNTQIAEELELPPVKIHCSILAEDAIKAAIADYKSKHTAK
>Mature_127_residues
AYSEKVIDHYENPRNVGSFDSQDPTIGSGMVGAPACGDVMKLQIKVNEAGIIEDARFKTYGCGSAIASSSLVTEWMKGKS
LDQAEAIKNTQIAEELELPPVKIHCSILAEDAIKAAIADYKSKHTAK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=71.4285714285714, Blast_Score=195, Evalue=9e-51,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=70.6349206349206, Blast_Score=192, Evalue=9e-50,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=89.84375, Blast_Score=239, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=69.0476190476191, Blast_Score=193, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=69.3548387096774, Blast_Score=187, Evalue=3e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=69.9186991869919, Blast_Score=183, Evalue=9e-48,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=73.015873015873, Blast_Score=202, Evalue=7e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13759; Mature: 13628

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDSQDPTIGSGMVGAPACGDVMKLQIKVNEAGIIEDARFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWMKGKSLDQAEAIKNTQIAEELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKHTAK
HHHCCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDSQDPTIGSGMVGAPACGDVMKLQIKVNEAGIIEDARFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWMKGKSLDQAEAIKNTQIAEELELPPVKIHCSILAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
YKSKHTAK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]