Definition | Yersinia pestis CO92 chromosome, complete genome. |
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Accession | NC_003143 |
Length | 4,653,728 |
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The map label for this gene is asd [H]
Identifier: 218929837
GI number: 218929837
Start: 3099152
End: 3100162
Strand: Direct
Name: asd [H]
Synonym: YPO2765
Alternate gene names: 218929837
Gene position: 3099152-3100162 (Clockwise)
Preceding gene: 218929835
Following gene: 218929838
Centisome position: 66.6
GC content: 53.31
Gene sequence:
>1011_bases ATGTCTGACGGCTGGAATATTGCTCTATTAGGGGCAACGGGCGCAGTAGGTGAAGCTTTGCTGGAGCTGTTAAATGAGCG CCAGTTCCCAGTTGGTGAATTGTATCCTTTGGCGAGCGAGCGCAGTGCCGGTGCTACTGTACGTTTTAACGGTAAAAGTA TACTGGTTGAGAATGTGGCTGAATTTGACTGGTCCCAGGCTCAACTCGCCTTCTTTGTCGCAGGCCGTGAAGCATCGGCA CAATATGCGGAAGAGGCTGGGAATGCCGGTTGTCTGGTGATCGACAGTAGCGGCTTGTTCGCTATGGAACCCGATATTCC CTTGGTGGTGCCGAGCGTCAATCCTCAGGTGCTGGCTGATTACCGTAATCGTAATATCGTGGCGGTAGCCGATAGCCTGA CCAGCCAGTTGCTGACGGCGATTAAACCGCTGACAGAACAGGCGGGGCTGTCTCGCCTGCATGTGACTAACCTGATTTCA GCCTCAGCACATGGCAAAGCGGCGGTGGACGATCTCGCTGGGCAAAGTGCCAAGCTGCTCAATGGCATTCCTGCGGAACC GGGTATCTTCCCTAAGCAATTGGCGTTTAACGTTTTACCGCTGCTGGCCGATGAAGAGGGCAGTGTGAGCGAAGAGCGCC GTCTGGTTGATCAGGTGCGTAAAGTATTACAGGACGAAGGCTTGCCGATCACCGTAAGCTGCATTCAGTCACCGGTATTT TATGGCCATGCGCAAGTGGTTCATCTGGAGGCATTGCGCCCGATCGCTGCCGAAGAAGCTCGTAGCGAACTGGAAAATTG TGACGATATCCAATTGTCCGAAGAAGATGATTATCCAACCCAGGTCAGCGACGCCTCCGGCAGCGATGCCCTGAGTATTG GTTGCGTTCGCAACGATTATGGTATTCCTGAAGTGCTGCAATTCTGGTCGGTGGCTGACAACATTCGTTTTGGTGGCGCA TTGATGGCGATTCAAACGGCAGAGCGCCTGTTACAGGAGCAACTATACTGA
Upstream 100 bases:
>100_bases AATAACGTCATGTTATTCAATAATTTAATCATTATTTAATGAGCTCATATCATTCAGTGAACTCATATTATTCCAATGAA CTATAGCGGAGAAAACCAAC
Downstream 100 bases:
>100_bases TGTCCGGGTTTGAATTAGATCAGGAAGAAACATTAGTTCAGCAAAACACATTGGCTCAGCAAGAAAAACCGGCAGAAGTG GCCGGTTTGAAAATTGCGTT
Product: putative semialdehyde dehydrogenase
Products: L-4-aspartyl phosphate; NADPH; H+
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MSDGWNIALLGATGAVGEALLELLNERQFPVGELYPLASERSAGATVRFNGKSILVENVAEFDWSQAQLAFFVAGREASA QYAEEAGNAGCLVIDSSGLFAMEPDIPLVVPSVNPQVLADYRNRNIVAVADSLTSQLLTAIKPLTEQAGLSRLHVTNLIS ASAHGKAAVDDLAGQSAKLLNGIPAEPGIFPKQLAFNVLPLLADEEGSVSEERRLVDQVRKVLQDEGLPITVSCIQSPVF YGHAQVVHLEALRPIAAEEARSELENCDDIQLSEEDDYPTQVSDASGSDALSIGCVRNDYGIPEVLQFWSVADNIRFGGA LMAIQTAERLLQEQLY
Sequences:
>Translated_336_residues MSDGWNIALLGATGAVGEALLELLNERQFPVGELYPLASERSAGATVRFNGKSILVENVAEFDWSQAQLAFFVAGREASA QYAEEAGNAGCLVIDSSGLFAMEPDIPLVVPSVNPQVLADYRNRNIVAVADSLTSQLLTAIKPLTEQAGLSRLHVTNLIS ASAHGKAAVDDLAGQSAKLLNGIPAEPGIFPKQLAFNVLPLLADEEGSVSEERRLVDQVRKVLQDEGLPITVSCIQSPVF YGHAQVVHLEALRPIAAEEARSELENCDDIQLSEEDDYPTQVSDASGSDALSIGCVRNDYGIPEVLQFWSVADNIRFGGA LMAIQTAERLLQEQLY >Mature_335_residues SDGWNIALLGATGAVGEALLELLNERQFPVGELYPLASERSAGATVRFNGKSILVENVAEFDWSQAQLAFFVAGREASAQ YAEEAGNAGCLVIDSSGLFAMEPDIPLVVPSVNPQVLADYRNRNIVAVADSLTSQLLTAIKPLTEQAGLSRLHVTNLISA SAHGKAAVDDLAGQSAKLLNGIPAEPGIFPKQLAFNVLPLLADEEGSVSEERRLVDQVRKVLQDEGLPITVSCIQSPVFY GHAQVVHLEALRPIAAEEARSELENCDDIQLSEEDDYPTQVSDASGSDALSIGCVRNDYGIPEVLQFWSVADNIRFGGAL MAIQTAERLLQEQLY
Specific function: Unknown
COG id: COG0136
COG function: function code E; Aspartate-semialdehyde dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate-semialdehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788658, Length=337, Percent_Identity=71.8100890207715, Blast_Score=499, Evalue=1e-143, Organism=Saccharomyces cerevisiae, GI6320362, Length=387, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012080 - InterPro: IPR016040 - InterPro: IPR000534 - InterPro: IPR012280 [H]
Pfam domain/function: PF01118 Semialdhyde_dh; PF02774 Semialdhyde_dhC [H]
EC number: 1.2.1.11
Molecular weight: Translated: 36060; Mature: 35929
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDGWNIALLGATGAVGEALLELLNERQFPVGELYPLASERSAGATVRFNGKSILVENVA CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEECCCEEEEHHHH EFDWSQAQLAFFVAGREASAQYAEEAGNAGCLVIDSSGLFAMEPDIPLVVPSVNPQVLAD HCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEECCCCHHHHHH YRNRNIVAVADSLTSQLLTAIKPLTEQAGLSRLHVTNLISASAHGKAAVDDLAGQSAKLL CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCHHHH NGIPAEPGIFPKQLAFNVLPLLADEEGSVSEERRLVDQVRKVLQDEGLPITVSCIQSPVF CCCCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCE YGHAQVVHLEALRPIAAEEARSELENCDDIQLSEEDDYPTQVSDASGSDALSIGCVRNDY ECCEEEEEEHHHCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC GIPEVLQFWSVADNIRFGGALMAIQTAERLLQEQLY CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDGWNIALLGATGAVGEALLELLNERQFPVGELYPLASERSAGATVRFNGKSILVENVA CCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEECCCEEEEHHHH EFDWSQAQLAFFVAGREASAQYAEEAGNAGCLVIDSSGLFAMEPDIPLVVPSVNPQVLAD HCCCCCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEECCCCHHHHHH YRNRNIVAVADSLTSQLLTAIKPLTEQAGLSRLHVTNLISASAHGKAAVDDLAGQSAKLL CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCHHHH NGIPAEPGIFPKQLAFNVLPLLADEEGSVSEERRLVDQVRKVLQDEGLPITVSCIQSPVF CCCCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCE YGHAQVVHLEALRPIAAEEARSELENCDDIQLSEEDDYPTQVSDASGSDALSIGCVRNDY ECCEEEEEEHHHCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC GIPEVLQFWSVADNIRFGGALMAIQTAERLLQEQLY CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate 4-semialdehyde; phosphate; NADP+
Specific reaction: L-aspartate 4-semialdehyde + phosphate + NADP+ = L-4-aspartyl phosphate + NADPH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2991861; 9205837; 9278503; 3029016; 2681152 [H]