| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
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The map label for this gene is 218929566
Identifier: 218929566
GI number: 218929566
Start: 2778494
End: 2779780
Strand: Reverse
Name: 218929566
Synonym: YPO2477
Alternate gene names: NA
Gene position: 2779780-2778494 (Counterclockwise)
Preceding gene: 218929570
Following gene: 218929565
Centisome position: 59.73
GC content: 45.61
Gene sequence:
>1287_bases ATGTTAGAAAAAATGAAGAATACCCTGATTTCATTGGCAATTGCCTCCAGTTGTGTGGTGTTTACTGGCTGTGACAATGA TACGGCATCGGCTAAAAATGAAAAACAGGACATCACGCTTTGGATAGCGCCGAACAATGTCCAAGAGGCATTCTGGAGCG AAGTGGTTGGGGAGTGGAATAAACAACCAGATAAAAAGAAAGTCGTCTTCTCAACGATCCCGGCAGCGGGCAGCTCTGAA GAGGCGATAATGAATGCGATTGCTTCTGATCGCGCACCTGATATCTCAGAAAATATTTTTACCGGCTTTGGTTCTCAGCT TGCTGACTTAGGGCAGGTCGTTGATCTCTCGACGCTGGATGGCTATGAAAACTTAATTAGTACCCGTCAGATGACGGATA TTATGGATAATTGGCGCTATAACGGAAAAAACTACATCCTGCCGATTTATATGAACCCGGTACTCTTTTGGTGGCGTGGC GATTTATTAAAAGAGCAGGGCTTTAGCGAGGTGCCAAAAACGTATGACGAGGTTTACGCACTCTCCGAAAAATACACCAT TCCAGACAAACGTTATGCGATACAAGCTACTTCTGGCCGTAACTGGTGGGACCGTTGGTTTGATTTTATTGCCCTCTATT ATGCCCAAAGTGATGGCAAGCCTTATATCGCCAATCAGCAAGCCAGCTATGATAACCAGGCCGGTCGTGACGTTCTGGAC TTTATGCACACACTCTTTTCAAAAAAATGGACCCTTTATGATTTTGGCCAGGATGATCCATTAGTCACCGGTAAAGTATT GGGCGCAGTACGCGGTCCTTGGGATATTAGCCGCTACCAACAACAATATCCGGAAATTTTAAAGCACATAAAAATGGGGC CGATGCTGGTTAAAGAGCAGCAAGATAAACCACATACTTTCGCCGATGGTAAAGGACTGGTGCTGTTTAGTCATTCAAAG GTTAAACCCGAGGCGTGGGAGTTTATCCAGTGGGTATTCAGCCAGCCCAAATTCGATAAACGTTGGATGGAATTGACCGG TATGCCACCCGCTAGGGCAGATTTGCTCACCAATCCTTTCTTTGCCGAATATTATCAGGAACACCCGTATGCCGCGGCCT ACGCTGAATATGTCAACGTGGCGATACCTCCGGTTTCCAGTGGTGAAACGGTGGAAATTCAACGCAGCATGACACAAATG ATTGAGAAGACCGCGTTTAATACTGCAACGCCTGATGAAGCATTGCAACAGTCAATAAAAGAAGTGAACGCGATTTTAAA GCCCTAA
Upstream 100 bases:
>100_bases AATACTTCACATCATTATCGAAATTACGCTGCTATTTTATTTTAACGTTAAAATTGGTCTTCCAGCCTTTTCTTTCAACA ACGGCCCTGGGAATAGAATA
Downstream 100 bases:
>100_bases GATTTTAAAACGCTAGGATTTTAAAGTCCTAATATTTTGGAATCCTAGCAGTAAGAATGAGTTAATTTCTTGCTTTCTGC ATCAAAGTGAGCCAGGTGGC
Product: putative solute-binding protein
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter Periplasmic Component; ABC-Type Sugar Transport System Periplasmic Component
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSE EAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRG DLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLD FMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSK VKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQM IEKTAFNTATPDEALQQSIKEVNAILKP
Sequences:
>Translated_428_residues MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSE EAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRG DLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLD FMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSK VKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQM IEKTAFNTATPDEALQQSIKEVNAILKP >Mature_428_residues MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSE EAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRG DLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLD FMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSK VKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQM IEKTAFNTATPDEALQQSIKEVNAILKP
Specific function: Unknown
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48881; Mature: 48881
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWN CHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC KQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLD CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCHHHC GYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYA CHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCEEEECCCHHHHHCCCCHHHHHHHHHHH LSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLD HHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH FMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQ HHHHHHCCCCEEEECCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECC QDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPF CCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCH FAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIK HHHHHHHCCHHHHHHHHHHEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHH EVNAILKP HHHHHCCC >Mature Secondary Structure MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWN CHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC KQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLD CCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCHHHC GYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYA CHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCEEEECCCHHHHHCCCCHHHHHHHHHHH LSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLD HHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH FMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQ HHHHHHCCCCEEEECCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECC QDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPF CCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCH FAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIK HHHHHHHCCHHHHHHHHHHEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHH EVNAILKP HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA