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The map label for this gene is appB [H]

Identifier: 218902115

GI number: 218902115

Start: 964134

End: 965084

Strand: Direct

Name: appB [H]

Synonym: BCAH820_0997

Alternate gene names: 218902115

Gene position: 964134-965084 (Clockwise)

Preceding gene: 218902114

Following gene: 218902116

Centisome position: 18.18

GC content: 36.0

Gene sequence:

>951_bases
GTGTATAAAGTAATTGCGAAGAGGCTTTTAAATGCAATTCCGCTTTTATTTGTTATTTCTATTATTTCTTTTCTATTAAT
AAAACTAGCACCAGGAGATCCTGTGCGAAACTTTGTCACGCCGAATATGAGTCCAATTGATGTTGAGCGTATTCRCAAAA
GTTTAGGACTAGACCAACCAATTTATATGCAGTATATTTTATGGCTGAAAAATATTTTAACAGGGAACTTTGGTTACTCA
CTGCAAAATCACCGTCCTGTTTTAGATCTTATTGTAGAAAGATTACCAGCGACAATCGGTTTAATGGGATCTTCTTTACT
CGTCTCATTTGTGATCGCAATCCCACTTGGGTTATTTACAGGTGTGAAAAAGAATTCTATCTTTGATCGCATTGTAAACT
TTATTTCCTATGTAGGAATCTCAATGCCAGTCTTTTGGTTCGCGTTACTATTAATCTACTTGTTCTCTTTAAAGTTGAAT
CTTCTTCCGAGTATGGGTATGCGTACGGTTGGCCAAGATTCCGTCTGGGATATTGTCCAACATGGTATTTTACCTTGCAT
GGTGCTTGCGTTCCAAAACATCTCTGTCTATATGAGATATATTCGCTCAAGTACGATTCAGCAATTAGAAGAAGACTACG
TACAAATTCAATATGCGTACGGTGCTTCAAAGAAAACAGTTTTATTTAATCACGTACTTCGAAATGTATTAATACCAATC
ATTACAATTTTCGGATTATCTATTCCAAGTTTAGTGGGCGGAGCATTTATTACGGAAACAGTATTTTCATGGCCAGGTCT
TGGCTCACTTGGGGTAAATGCTATTTTTAGATTTGATTATCCGATTATCATGGCAATTACATTATTATCATCATTCATGT
TGATTCTTGGTAACTTAATTGCTGATATTTTATATGGCGTAGTAGATCCGCGCATTCGAATGAGGGGGTGA

Upstream 100 bases:

>100_bases
AAACTGTAAAGAAGCTGGTGGAAATCAGCTTCTTTATCAAGTTAAAGCCTAATTGATGTAGGCTAATGAAAGTTTCACTT
TACCTTGAGGGGGGAAGTTT

Downstream 100 bases:

>100_bases
TTTGGAATGAATAATAGGAGATTTCAAACGATAAAGCATAGTTTTACAAAAAATAAGTTTGTTGCAATGGGAGTTATTAT
ACTTGCGGTTTTAACGGTCG

Product: oligopeptide ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIXKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Sequences:

>Translated_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIXKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG
>Mature_316_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIXKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=39.3650793650794, Blast_Score=224, Evalue=4e-60,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=37.3417721518987, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.5029585798817, Blast_Score=219, Evalue=3e-58,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=34.3283582089552, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=30.379746835443, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=32.3529411764706, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35413; Mature: 35413

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIXKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC
>Mature Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIXKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMPVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEEDYVQIQYAYGASKKTVLFNHVLRNVLIPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHH
ITIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ADILYGVVDPRIRMRG
HHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]