| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884689
Identifier: 218884689
GI number: 218884689
Start: 1281114
End: 1281683
Strand: Direct
Name: 218884689
Synonym: DKAM_1378
Alternate gene names: NA
Gene position: 1281114-1281683 (Clockwise)
Preceding gene: 218884688
Following gene: 218884690
Centisome position: 93.84
GC content: 44.74
Gene sequence:
>570_bases ATGACTAAACACTGTTGTATCATAGAGGCCTATGACGACGGGTTTTTCCCTCCCGAATTCAAGGGCGGGAGGGGAGACAC CTTTATAGTAGGGGTTAAAACCAGTGGTTTCAGAGTTCTCGATATAGCTGTTTCAAGAGTACTTGTCGACGGTGGAGAAA CATATAAGAGGATAGTGGAGATGTCGGGGCTTCTAAACGGTGAACTCATAATGCTTGACGGCGTAACTTATGCAGGGTTC GATGTCGTAGATCCCTTTCTACTTCACAGCGAAACAGGGAAGCCCGTTGTAGCGGTTCAACTATATCCCTTAAACCTTGA GAGAGTTAGGTCAGCATTGCTAAAGCATTTTCCAGATGGGGAGGAAAGGTTTAGGGTGATGAGGAATTATTATGAGAGTC TTATCCCAATTGAGACGGCGTGGAGAATAATACAGGTAATGGCTGTGGGAATAGATCTAGGTAGGGTAGTAAGAGTCTTA AGGCATGTATGTATATATAGCCCTGAGCCAGAGCCCCTTAGAATAGCTGATAAGATAGCATCCTCTCTCTCGAAACTATT CATCTCCTAG
Upstream 100 bases:
>100_bases AATATGGTATCACGAGGATAATAAAGATAAGAAAGGATATGCTCCCAGTCATTAAGGATGCATTAAAGGATGTTGAAGCA TAGCCCCCAAGTGTTTCATA
Downstream 100 bases:
>100_bases TCCAGGGGAACACGGGTTACAACCGAAAGCCTCGCCCTTTAGGACAGGGATGAGGTCAGATGTTTTATTAATTTTGTAAA TATATTATGATACGGGGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MTKHCCIIEAYDDGFFPPEFKGGRGDTFIVGVKTSGFRVLDIAVSRVLVDGGETYKRIVEMSGLLNGELIMLDGVTYAGF DVVDPFLLHSETGKPVVAVQLYPLNLERVRSALLKHFPDGEERFRVMRNYYESLIPIETAWRIIQVMAVGIDLGRVVRVL RHVCIYSPEPEPLRIADKIASSLSKLFIS
Sequences:
>Translated_189_residues MTKHCCIIEAYDDGFFPPEFKGGRGDTFIVGVKTSGFRVLDIAVSRVLVDGGETYKRIVEMSGLLNGELIMLDGVTYAGF DVVDPFLLHSETGKPVVAVQLYPLNLERVRSALLKHFPDGEERFRVMRNYYESLIPIETAWRIIQVMAVGIDLGRVVRVL RHVCIYSPEPEPLRIADKIASSLSKLFIS >Mature_188_residues TKHCCIIEAYDDGFFPPEFKGGRGDTFIVGVKTSGFRVLDIAVSRVLVDGGETYKRIVEMSGLLNGELIMLDGVTYAGFD VVDPFLLHSETGKPVVAVQLYPLNLERVRSALLKHFPDGEERFRVMRNYYESLIPIETAWRIIQVMAVGIDLGRVVRVLR HVCIYSPEPEPLRIADKIASSLSKLFIS
Specific function: Unknown
COG id: COG1628
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0215 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002802 - ProDom: PD016744 [H]
Pfam domain/function: PF01949 DUF99 [H]
EC number: NA
Molecular weight: Translated: 21206; Mature: 21075
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKHCCIIEAYDDGFFPPEFKGGRGDTFIVGVKTSGFRVLDIAVSRVLVDGGETYKRIVE CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHCCCHHHHHHHH MSGLLNGELIMLDGVTYAGFDVVDPFLLHSETGKPVVAVQLYPLNLERVRSALLKHFPDG HHCCCCCCEEEECCCEECCHHHHCHHHEECCCCCCEEEEEEECCCHHHHHHHHHHHCCCH EERFRVMRNYYESLIPIETAWRIIQVMAVGIDLGRVVRVLRHVCIYSPEPEPLRIADKIA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH SSLSKLFIS HHHHHHHCC >Mature Secondary Structure TKHCCIIEAYDDGFFPPEFKGGRGDTFIVGVKTSGFRVLDIAVSRVLVDGGETYKRIVE CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHHHHHHHCCCHHHHHHHH MSGLLNGELIMLDGVTYAGFDVVDPFLLHSETGKPVVAVQLYPLNLERVRSALLKHFPDG HHCCCCCCEEEECCCEECCHHHHCHHHEECCCCCCEEEEEEECCCHHHHHHHHHHHCCCH EERFRVMRNYYESLIPIETAWRIIQVMAVGIDLGRVVRVLRHVCIYSPEPEPLRIADKIA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH SSLSKLFIS HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA