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The map label for this gene is rpl40e [H]

Identifier: 218884173

GI number: 218884173

Start: 828168

End: 828344

Strand: Reverse

Name: rpl40e [H]

Synonym: DKAM_0862

Alternate gene names: 218884173

Gene position: 828344-828168 (Counterclockwise)

Preceding gene: 218884174

Following gene: 218884171

Centisome position: 60.67

GC content: 48.02

Gene sequence:

>177_bases
ATGCCGGTGAATAATCCAGAGCTACAGAAAATAGTCTTCAACAGAGTGTTAAATAAGATGGTGTGCAGGAGATGTGGTGC
CCTGAACCCACCGGGCGCTACCAAGTGCAGGAGATGTAGATCCAAGGGCACGCTACGTCCTAAGAAAGCTGTTAGAACAG
CTACAAAAGCCACTTAG

Upstream 100 bases:

>100_bases
CAGGCTTAGAGACACTGGCCTGAATATATAGTCCTGGTACCAGGGAAGATTTTTAAATCACTCAAGGTATTGAGGAGAAG
GGTAGAGGGGTGCTTAATAT

Downstream 100 bases:

>100_bases
AGTTTGTTTAATGTTTTAATGTAAAACCCAGCTTACCCACCTCCTAAGCTTGTTATCATATATTATCAGCGATATCAGCC
CAGCCACGATTCCATAGTAA

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 58; Mature: 57

Protein sequence:

>58_residues
MPVNNPELQKIVFNRVLNKMVCRRCGALNPPGATKCRRCRSKGTLRPKKAVRTATKAT

Sequences:

>Translated_58_residues
MPVNNPELQKIVFNRVLNKMVCRRCGALNPPGATKCRRCRSKGTLRPKKAVRTATKAT
>Mature_57_residues
PVNNPELQKIVFNRVLNKMVCRRCGALNPPGATKCRRCRSKGTLRPKKAVRTATKAT

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001975
- InterPro:   IPR001876 [H]

Pfam domain/function: PF01020 Ribosomal_L40e [H]

EC number: NA

Molecular weight: Translated: 6481; Mature: 6350

Theoretical pI: Translated: 12.11; Mature: 12.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNNPELQKIVFNRVLNKMVCRRCGALNPPGATKCRRCRSKGTLRPKKAVRTATKAT
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PVNNPELQKIVFNRVLNKMVCRRCGALNPPGATKCRRCRSKGTLRPKKAVRTATKAT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA