Click here to switch to the map view.

The map label for this gene is 218884085

Identifier: 218884085

GI number: 218884085

Start: 742281

End: 744110

Strand: Reverse

Name: 218884085

Synonym: DKAM_0774

Alternate gene names: NA

Gene position: 744110-742281 (Counterclockwise)

Preceding gene: 218884086

Following gene: 218884084

Centisome position: 54.5

GC content: 44.26

Gene sequence:

>1830_bases
GTGACGTTTATAGACGCCATACATTCAAGACCGGGTCTCGAGAGAGCAAGAGAGCTTTTTAAGAGAGACGGCAAGCTGGT
CTTAATCGCTCCAACAGGATATGGGAAGACAGTCTTATCCCTGAAGTTGTATAGAGACTATGTTCAGCAAGGACCGTGGG
GAGGCTTAATACATGTAGTGCCCTACAGAGCCCTTGTGAGGCAGATATATTCTGAAAAATTCAAGCCATATGTTCCATCC
TCCGGCTACCAGTCGCTTGAGTATATTGAACCAAAATATAAATCACCATATTTCCTTAGAGACTTAGTTGTAACAACGCT
CGACAGCTTCGTATATAACCTCTTCAAGATACCCGTCGCAGAGCTGAACAAGATTTATAGGATGGTTTCACAAGGCCACT
ACTATCCTATAGAGCTCTCTATCTTCACATCAATCATAGTCTTAGACGAAGCCCACGTATACCTTGGAGATACAGATGAG
GATACATCTATTGCATCAGTAGTAGCAGCCAGCACGTTTCTCAATAATGCCGGAGTCCCGTTACTCATCGAGTCTGCTAC
GATGCACAGCGATATAGTTTCAGCGTTATCCAATAACATCCTGGGAGGAGCGAAAGTGGTTTATATTGGAGACGAGAACA
ACCAGGTGAAGAATCTCAGAGCGAAGGGGACTAGCGTTGAAGTAGTTCGGGACAGAGATTTCGAATCCTCTAATTCGTTC
AACTGGCGTACACAGCTAGTAAGTAAAGATAAAATAATTGAGGTCCTACAGGAACATTGTAGATCGAGCCTAGTACTCTT
AATCACAAACACTGTGAAGAGAGCTATTGAGATCTACAATGAGATCCTTGAGAAAGGAGCGTGTGATAAGGCAGTATTGC
TACATGGTTCAATGAGCAACAAGGATAGAGAGAAGGCATTAAGCGAGATGAACAAGGCATTGTCAGGCGTAATAGTATCC
ACTCAAGTTGTAGAAGCTGGAGTCGAGCTTCCAAGCAGAGTCTTGATCACAGACCCAGCACCCCTGGAGAACCTGGCTCA
AAGAGCCGGGAGACTGTGTAGAGAGAAATACACCAACATATACGAAGAGTGTAAGAAAGAGGGCCCCCTGGTGTTCATAG
TTAAACCTGCAGGGGACTCCGAGTTAGATGAACTCAAGGGTCCCTATAGAGCTGAGCGAGTGAAGTCTGTTCTCGCTTCG
ATTAACAATGTTCTAGGGAGACATAGAGAGGTTGACTGGAGGCTGATGTCTCATAGAGAGAATTATACTCCATTCGTTGA
ACTACTAGAGGACACTCAAGCAGTTCAACAAGGCCCTCTAAAGACGAATATTGGAGCAGTAATACTTGGGGAGTATCTAA
GGAGCGATGCTATGCCCGAGGTTTTAATTAATATATTAAGCTCCATTGGTTTAGAGCTCACTAGATCAGGCTTTCTGGTA
AACTTGCTTGTGAACGCCAAGGATGTATGCGGTAGAGAGTTAGGAGACCTAGAGGAGCTGGAAACCGTGTCCATCGATTT
GAGGAGCTTACTGAGACGTGGGGGTGTAAGAATTGTAGAGACTATTAGCATGGATGGCAGAGACTATTTGAGGCTAGCGG
TAGTGAGAGTAGTTAGGAAGAATGGTGAGAACGTATTCAAGGTCGTATGTGATGAAAAAAGCAAATATTATATTCCTACC
TGGGCTAAAGAAATATCTCACAAGGAATATCAGGATTTGACAACCCCTAAGGTCGAAGATGGGGAAGAGTACTTTGGAAG
TATTGCCATTACTCTCCTGATAGCGTCTGAAGGAAGCTATGTTAAAGGGAGGGGTCTATCAGTATGGTGA

Upstream 100 bases:

>100_bases
GAATATCTGTTGGAAGAATAAGTACATTTGCACAGACTTGGAGTCACTCTTGAGGTATTTAATGAGGTTGTCATATTAGC
GTCGACTCCGAGGGTTTGTC

Downstream 100 bases:

>100_bases
AATGTGATATTTCAGACTGGCCTCTAGCCTATTACGAAGTCAAAACCGGCAACGTAGTGAAGGTGCCGCTACAAAAACAC
TTGGTCTCGACCTCAAGGAT

Product: CRISPR-associated ATP-dependent RNA helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 608

Protein sequence:

>609_residues
MTFIDAIHSRPGLERARELFKRDGKLVLIAPTGYGKTVLSLKLYRDYVQQGPWGGLIHVVPYRALVRQIYSEKFKPYVPS
SGYQSLEYIEPKYKSPYFLRDLVVTTLDSFVYNLFKIPVAELNKIYRMVSQGHYYPIELSIFTSIIVLDEAHVYLGDTDE
DTSIASVVAASTFLNNAGVPLLIESATMHSDIVSALSNNILGGAKVVYIGDENNQVKNLRAKGTSVEVVRDRDFESSNSF
NWRTQLVSKDKIIEVLQEHCRSSLVLLITNTVKRAIEIYNEILEKGACDKAVLLHGSMSNKDREKALSEMNKALSGVIVS
TQVVEAGVELPSRVLITDPAPLENLAQRAGRLCREKYTNIYEECKKEGPLVFIVKPAGDSELDELKGPYRAERVKSVLAS
INNVLGRHREVDWRLMSHRENYTPFVELLEDTQAVQQGPLKTNIGAVILGEYLRSDAMPEVLINILSSIGLELTRSGFLV
NLLVNAKDVCGRELGDLEELETVSIDLRSLLRRGGVRIVETISMDGRDYLRLAVVRVVRKNGENVFKVVCDEKSKYYIPT
WAKEISHKEYQDLTTPKVEDGEEYFGSIAITLLIASEGSYVKGRGLSVW

Sequences:

>Translated_609_residues
MTFIDAIHSRPGLERARELFKRDGKLVLIAPTGYGKTVLSLKLYRDYVQQGPWGGLIHVVPYRALVRQIYSEKFKPYVPS
SGYQSLEYIEPKYKSPYFLRDLVVTTLDSFVYNLFKIPVAELNKIYRMVSQGHYYPIELSIFTSIIVLDEAHVYLGDTDE
DTSIASVVAASTFLNNAGVPLLIESATMHSDIVSALSNNILGGAKVVYIGDENNQVKNLRAKGTSVEVVRDRDFESSNSF
NWRTQLVSKDKIIEVLQEHCRSSLVLLITNTVKRAIEIYNEILEKGACDKAVLLHGSMSNKDREKALSEMNKALSGVIVS
TQVVEAGVELPSRVLITDPAPLENLAQRAGRLCREKYTNIYEECKKEGPLVFIVKPAGDSELDELKGPYRAERVKSVLAS
INNVLGRHREVDWRLMSHRENYTPFVELLEDTQAVQQGPLKTNIGAVILGEYLRSDAMPEVLINILSSIGLELTRSGFLV
NLLVNAKDVCGRELGDLEELETVSIDLRSLLRRGGVRIVETISMDGRDYLRLAVVRVVRKNGENVFKVVCDEKSKYYIPT
WAKEISHKEYQDLTTPKVEDGEEYFGSIAITLLIASEGSYVKGRGLSVW
>Mature_608_residues
TFIDAIHSRPGLERARELFKRDGKLVLIAPTGYGKTVLSLKLYRDYVQQGPWGGLIHVVPYRALVRQIYSEKFKPYVPSS
GYQSLEYIEPKYKSPYFLRDLVVTTLDSFVYNLFKIPVAELNKIYRMVSQGHYYPIELSIFTSIIVLDEAHVYLGDTDED
TSIASVVAASTFLNNAGVPLLIESATMHSDIVSALSNNILGGAKVVYIGDENNQVKNLRAKGTSVEVVRDRDFESSNSFN
WRTQLVSKDKIIEVLQEHCRSSLVLLITNTVKRAIEIYNEILEKGACDKAVLLHGSMSNKDREKALSEMNKALSGVIVST
QVVEAGVELPSRVLITDPAPLENLAQRAGRLCREKYTNIYEECKKEGPLVFIVKPAGDSELDELKGPYRAERVKSVLASI
NNVLGRHREVDWRLMSHRENYTPFVELLEDTQAVQQGPLKTNIGAVILGEYLRSDAMPEVLINILSSIGLELTRSGFLVN
LLVNAKDVCGRELGDLEELETVSIDLRSLLRRGGVRIVETISMDGRDYLRLAVVRVVRKNGENVFKVVCDEKSKYYIPTW
AKEISHKEYQDLTTPKVEDGEEYFGSIAITLLIASEGSYVKGRGLSVW

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 68352; Mature: 68221

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFIDAIHSRPGLERARELFKRDGKLVLIAPTGYGKTVLSLKLYRDYVQQGPWGGLIHVV
CCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEHHH
PYRALVRQIYSEKFKPYVPSSGYQSLEYIEPKYKSPYFLRDLVVTTLDSFVYNLFKIPVA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
ELNKIYRMVSQGHYYPIELSIFTSIIVLDEAHVYLGDTDEDTSIASVVAASTFLNNAGVP
HHHHHHHHHHCCCCEEEEHHHHHEEEEEECCEEEECCCCCCHHHHHHHHHHHHHCCCCCC
LLIESATMHSDIVSALSNNILGGAKVVYIGDENNQVKNLRAKGTSVEVVRDRDFESSNSF
EEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEECCCCCCCCCC
NWRTQLVSKDKIIEVLQEHCRSSLVLLITNTVKRAIEIYNEILEKGACDKAVLLHGSMSN
CHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
KDREKALSEMNKALSGVIVSTQVVEAGVELPSRVLITDPAPLENLAQRAGRLCREKYTNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
YEECKKEGPLVFIVKPAGDSELDELKGPYRAERVKSVLASINNVLGRHREVDWRLMSHRE
HHHHHHCCCEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
NYTPFVELLEDTQAVQQGPLKTNIGAVILGEYLRSDAMPEVLINILSSIGLELTRSGFLV
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCEEE
NLLVNAKDVCGRELGDLEELETVSIDLRSLLRRGGVRIVETISMDGRDYLRLAVVRVVRK
EEEECCHHHHCHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
NGENVFKVVCDEKSKYYIPTWAKEISHKEYQDLTTPKVEDGEEYFGSIAITLLIASEGSY
CCCCEEEEEECCCCCEECCHHHHHHCHHHHHHCCCCCCCCCHHHHHHEEEEEEEECCCCE
VKGRGLSVW
ECCCCCCCC
>Mature Secondary Structure 
TFIDAIHSRPGLERARELFKRDGKLVLIAPTGYGKTVLSLKLYRDYVQQGPWGGLIHVV
CHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEHHH
PYRALVRQIYSEKFKPYVPSSGYQSLEYIEPKYKSPYFLRDLVVTTLDSFVYNLFKIPVA
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
ELNKIYRMVSQGHYYPIELSIFTSIIVLDEAHVYLGDTDEDTSIASVVAASTFLNNAGVP
HHHHHHHHHHCCCCEEEEHHHHHEEEEEECCEEEECCCCCCHHHHHHHHHHHHHCCCCCC
LLIESATMHSDIVSALSNNILGGAKVVYIGDENNQVKNLRAKGTSVEVVRDRDFESSNSF
EEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEECCCCCCCCCC
NWRTQLVSKDKIIEVLQEHCRSSLVLLITNTVKRAIEIYNEILEKGACDKAVLLHGSMSN
CHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
KDREKALSEMNKALSGVIVSTQVVEAGVELPSRVLITDPAPLENLAQRAGRLCREKYTNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
YEECKKEGPLVFIVKPAGDSELDELKGPYRAERVKSVLASINNVLGRHREVDWRLMSHRE
HHHHHHCCCEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
NYTPFVELLEDTQAVQQGPLKTNIGAVILGEYLRSDAMPEVLINILSSIGLELTRSGFLV
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCCEEE
NLLVNAKDVCGRELGDLEELETVSIDLRSLLRRGGVRIVETISMDGRDYLRLAVVRVVRK
EEEECCHHHHCHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH
NGENVFKVVCDEKSKYYIPTWAKEISHKEYQDLTTPKVEDGEEYFGSIAITLLIASEGSY
CCCCEEEEEECCCCCEECCHHHHHHCHHHHHHCCCCCCCCCHHHHHHEEEEEEEECCCCE
VKGRGLSVW
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]