Click here to switch to the map view.

The map label for this gene is 218883987

Identifier: 218883987

GI number: 218883987

Start: 647540

End: 648256

Strand: Direct

Name: 218883987

Synonym: DKAM_0676

Alternate gene names: NA

Gene position: 647540-648256 (Clockwise)

Preceding gene: 218883986

Following gene: 218883988

Centisome position: 47.43

GC content: 47.84

Gene sequence:

>717_bases
GTGGAAATAAGGCTCCTAGTTCCCGTGGATGTTATAATAGACTCCCGAGAGGATAGTAAGCACCCTGAGTTCAGGGAAGC
GTTTACAAGGGAGGGATTAAAGACCGCTGTAAAGGAGCTACCTGTTGGAGACTTCCTTATAATGGCTCCAGAGGACAAGC
ACTCAATACTGGTTGAGAGGAAGACTGTTGATGATCTAGCCAACAGTATAAGGGATAACAGGATATGGGAACAGAGCAAG
TTACTGCTTGAGGAGGCCCGCAGAGGGGGGCATCGACCACTTATACTACTGGAGGGGTACCTGGGTACCTTGGAGAAGTA
TAGGGGCTGGAGGATTCAGAGCATTCTGAGAGTGCTGGATACCCTGATACTTGAAATGGGGATTCCTGTGCTTAACACAC
CGGGTAAGGATGCCACTATTGCGTGGATTATATCTAAGGCTAAGAGTCTGGGGAGAACAGAGGAGAAGCGTGTCTACAGG
ATGAGGGTTGAGAAGAAGCCAATGGATATACAGGAGAGGATACTCTATGTAGCTGAGAGTATTATAGGGCCTGTGCTTGC
CAGGAAGCTCCTAGCAAGGTTTAAGACCCTTAAGAACCTTGCTAATGCATCAAAGCACGAGTTACTCAGTGTTGAAGGCA
TTGGCGAGAAACGGGCTGAGGAGATATACTTATTATTCAACACGCCTTGGAGTAGTAATGGGGAAGGGGTGGAGTAA

Upstream 100 bases:

>100_bases
TTACTCTCTAGCAGCCAGGGACGTGCCTGGTGAAGACTATCCAAGGGCTGCATTGTACTATAGAAGGAAAACCTAGAGCC
AGAGACACGGGGTATTAAGT

Downstream 100 bases:

>100_bases
AGAGTGAGAGATGATGTTTTAAGCTATCTAATACCCGTCTTGGTGGCGGCAGCAACCACTAGTATACTGCTCGAATGGTG
GGTTAGAACAGGTTTAAGGC

Product: ERCC4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MEIRLLVPVDVIIDSREDSKHPEFREAFTREGLKTAVKELPVGDFLIMAPEDKHSILVERKTVDDLANSIRDNRIWEQSK
LLLEEARRGGHRPLILLEGYLGTLEKYRGWRIQSILRVLDTLILEMGIPVLNTPGKDATIAWIISKAKSLGRTEEKRVYR
MRVEKKPMDIQERILYVAESIIGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFNTPWSSNGEGVE

Sequences:

>Translated_238_residues
MEIRLLVPVDVIIDSREDSKHPEFREAFTREGLKTAVKELPVGDFLIMAPEDKHSILVERKTVDDLANSIRDNRIWEQSK
LLLEEARRGGHRPLILLEGYLGTLEKYRGWRIQSILRVLDTLILEMGIPVLNTPGKDATIAWIISKAKSLGRTEEKRVYR
MRVEKKPMDIQERILYVAESIIGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFNTPWSSNGEGVE
>Mature_238_residues
MEIRLLVPVDVIIDSREDSKHPEFREAFTREGLKTAVKELPVGDFLIMAPEDKHSILVERKTVDDLANSIRDNRIWEQSK
LLLEEARRGGHRPLILLEGYLGTLEKYRGWRIQSILRVLDTLILEMGIPVLNTPGKDATIAWIISKAKSLGRTEEKRVYR
MRVEKKPMDIQERILYVAESIIGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFNTPWSSNGEGVE

Specific function: Unknown

COG id: COG1948

COG function: function code L; ERCC4-type nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR020819
- InterPro:   IPR006166
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR011335
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00270 DEAD; PF02732 ERCC4; PF00271 Helicase_C; PF00633 HHH [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 27249; Mature: 27249

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRLLVPVDVIIDSREDSKHPEFREAFTREGLKTAVKELPVGDFLIMAPEDKHSILVER
CCEEEEEEHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEH
KTVDDLANSIRDNRIWEQSKLLLEEARRGGHRPLILLEGYLGTLEKYRGWRIQSILRVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHH
TLILEMGIPVLNTPGKDATIAWIISKAKSLGRTEEKRVYRMRVEKKPMDIQERILYVAES
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
IIGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFNTPWSSNGEGVE
HHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MEIRLLVPVDVIIDSREDSKHPEFREAFTREGLKTAVKELPVGDFLIMAPEDKHSILVER
CCEEEEEEHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEH
KTVDDLANSIRDNRIWEQSKLLLEEARRGGHRPLILLEGYLGTLEKYRGWRIQSILRVLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHH
TLILEMGIPVLNTPGKDATIAWIISKAKSLGRTEEKRVYRMRVEKKPMDIQERILYVAES
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
IIGPVLARKLLARFKTLKNLANASKHELLSVEGIGEKRAEEIYLLFNTPWSSNGEGVE
HHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]