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The map label for this gene is yafD [C]

Identifier: 218710298

GI number: 218710298

Start: 2499667

End: 2500692

Strand: Reverse

Name: yafD [C]

Synonym: VS_2332

Alternate gene names: 218710298

Gene position: 2500692-2499667 (Counterclockwise)

Preceding gene: 218710299

Following gene: 218710294

Centisome position: 75.79

GC content: 42.79

Gene sequence:

>1026_bases
GTGTTGATACCATTATCGAAACGGCTCAAACAGGTAAAATTGGTGACGGTAAGATCTTCATTACTGAAGTTGAACGTGTG
GTACGTATTCGTACTGGCGAAGAAGACGAAGACGCCGTATAAAAAAACTATTACCTTAAAAGGAGCGTTTATCGCTCCTT
TTTCATTTCTGGTAGGGTGCTGTATGTTTAAGAAAACCATCATTGTTATCACGCTATTGATAACGCTTGCTGTTGTTAGC
TTTCATATTATCTTCGTGATCCCGAATAAACCCAATTTGATCACTTCTTCTCAAAATACCAGCAACGATATCTACAGCTG
CTACCAAAACTCAGCCCCGAAAGCGATTGATGTGTCTGATGGCCTAGACATTACCGTGTGGAATATCTATAAGCAAAACC
GAAATAATTGGCAAAGTGAGTTAAATCAGCTGTCAGCCGGTAGCGATTTAGTTTTGCTGCAAGAAGCGAGTATGACAGAA
GGGCTTCGCCAATGGGTAACGAGTGGTCAATGGGGAAGTACTCGAGTGAATGCATTTGAAGCTTTTGAACAAAGTGCAGG
CGTACTCAACCTAGCGACGCATCTACCGATTGAAGCTTGTGCTTATACTCATGAAGAACCTTGGCTTCAATTACCTAAAT
CTGCACTTTGGTCTCGCTATCTGCTAAGTAATGGCGAAGAACTGGCTGTGATTAATATCCATGCGGTGAACTTTACCTTT
GGTACGGAAGATTATGAGGCTCAGCTCAAGAGCTTAACCGACAATCTCCAAAAGTATCGTGGGCCTGTTATTTTTGCTGG
GGATTTTAACAGTTGGAGTGAAGCTCGCTTTGCTGTATTGAAAGATGCGTTGGAACAGGTAGGTTTGACGGAAGTTGCTT
TTGAACCAGATAACCGTACACAGTTTATGACAGGGTTGGTGCTCGATTATGTGTTCTATCGAGGGTTAGAAGTAGACAAA
GCAAAGGCGCCCATTACGGACGCCTCTGATCATAACCCTATGCGAGTGACCTTTAAGGCTAAATAG

Upstream 100 bases:

>100_bases
AAAGGTCATACTGAGCTATACCGTGGCGCAGAGTACATGGTCGATTTTTTACCTAAAGTGAAATTGGAAATTGTTGTGAC
CGACGAAGTGGCTGACCAAT

Downstream 100 bases:

>100_bases
AAGAAGCTATCTAGCCTATTAGCCTATTAGTCATTGGATCTTAGCTATTCACCATTCGCACTGTGGTTACTTTGGGTAAT
AAGTAGGGGAATAAATAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MLIPLSKRLKQVKLVTVRSSLLKLNVWYVFVLAKKTKTPYKKTITLKGAFIAPFSFLVGCCMFKKTIIVITLLITLAVVS
FHIIFVIPNKPNLITSSQNTSNDIYSCYQNSAPKAIDVSDGLDITVWNIYKQNRNNWQSELNQLSAGSDLVLLQEASMTE
GLRQWVTSGQWGSTRVNAFEAFEQSAGVLNLATHLPIEACAYTHEEPWLQLPKSALWSRYLLSNGEELAVINIHAVNFTF
GTEDYEAQLKSLTDNLQKYRGPVIFAGDFNSWSEARFAVLKDALEQVGLTEVAFEPDNRTQFMTGLVLDYVFYRGLEVDK
AKAPITDASDHNPMRVTFKAK

Sequences:

>Translated_341_residues
MLIPLSKRLKQVKLVTVRSSLLKLNVWYVFVLAKKTKTPYKKTITLKGAFIAPFSFLVGCCMFKKTIIVITLLITLAVVS
FHIIFVIPNKPNLITSSQNTSNDIYSCYQNSAPKAIDVSDGLDITVWNIYKQNRNNWQSELNQLSAGSDLVLLQEASMTE
GLRQWVTSGQWGSTRVNAFEAFEQSAGVLNLATHLPIEACAYTHEEPWLQLPKSALWSRYLLSNGEELAVINIHAVNFTF
GTEDYEAQLKSLTDNLQKYRGPVIFAGDFNSWSEARFAVLKDALEQVGLTEVAFEPDNRTQFMTGLVLDYVFYRGLEVDK
AKAPITDASDHNPMRVTFKAK
>Mature_341_residues
MLIPLSKRLKQVKLVTVRSSLLKLNVWYVFVLAKKTKTPYKKTITLKGAFIAPFSFLVGCCMFKKTIIVITLLITLAVVS
FHIIFVIPNKPNLITSSQNTSNDIYSCYQNSAPKAIDVSDGLDITVWNIYKQNRNNWQSELNQLSAGSDLVLLQEASMTE
GLRQWVTSGQWGSTRVNAFEAFEQSAGVLNLATHLPIEACAYTHEEPWLQLPKSALWSRYLLSNGEELAVINIHAVNFTF
GTEDYEAQLKSLTDNLQKYRGPVIFAGDFNSWSEARFAVLKDALEQVGLTEVAFEPDNRTQFMTGLVLDYVFYRGLEVDK
AKAPITDASDHNPMRVTFKAK

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=225, Percent_Identity=41.3333333333333, Blast_Score=173, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 38377; Mature: 38377

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPLSKRLKQVKLVTVRSSLLKLNVWYVFVLAKKTKTPYKKTITLKGAFIAPFSFLVGC
CCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHH
CMFKKTIIVITLLITLAVVSFHIIFVIPNKPNLITSSQNTSNDIYSCYQNSAPKAIDVSD
HHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCEEECCC
GLDITVWNIYKQNRNNWQSELNQLSAGSDLVLLQEASMTEGLRQWVTSGQWGSTRVNAFE
CCEEEEEEEEHHCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHH
AFEQSAGVLNLATHLPIEACAYTHEEPWLQLPKSALWSRYLLSNGEELAVINIHAVNFTF
HHHHCCCEEEEHHCCCHHHHHCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEEEEEEEE
GTEDYEAQLKSLTDNLQKYRGPVIFAGDFNSWSEARFAVLKDALEQVGLTEVAFEPDNRT
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
QFMTGLVLDYVFYRGLEVDKAKAPITDASDHNPMRVTFKAK
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MLIPLSKRLKQVKLVTVRSSLLKLNVWYVFVLAKKTKTPYKKTITLKGAFIAPFSFLVGC
CCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHH
CMFKKTIIVITLLITLAVVSFHIIFVIPNKPNLITSSQNTSNDIYSCYQNSAPKAIDVSD
HHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCEEECCC
GLDITVWNIYKQNRNNWQSELNQLSAGSDLVLLQEASMTEGLRQWVTSGQWGSTRVNAFE
CCEEEEEEEEHHCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHH
AFEQSAGVLNLATHLPIEACAYTHEEPWLQLPKSALWSRYLLSNGEELAVINIHAVNFTF
HHHHCCCEEEEHHCCCHHHHHCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEEEEEEEE
GTEDYEAQLKSLTDNLQKYRGPVIFAGDFNSWSEARFAVLKDALEQVGLTEVAFEPDNRT
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
QFMTGLVLDYVFYRGLEVDKAKAPITDASDHNPMRVTFKAK
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]