Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 218710294

GI number: 218710294

Start: 2495606

End: 2496394

Strand: Reverse

Name: yafS [H]

Synonym: VS_2328

Alternate gene names: 218710294

Gene position: 2496394-2495606 (Counterclockwise)

Preceding gene: 218710298

Following gene: 218710293

Centisome position: 75.66

GC content: 44.49

Gene sequence:

>789_bases
TTGATGAAGCCAGCACGTAGCAGAAAGAAGTTTGAGCGTCCTTATACTTGGGCACAATTGCACAATGGGGACTGGTTGAG
AGAATCTATTCAAACTCGACTCGATGAGTGGTGCCCAAAACTATTTGGTTACCATATGCTCAAACTTGGTGGCCTCAGCA
GTGAGATTTCTAGCTGCACATGCAACATTCAACATCAAGTAAACCTAGATATCCAGAACCCATTACATAATGTGATAGCA
GATGGTTATAATTTACCCTTTTTAGAGAAAAGCTTTGATGTTGTGGTGCTGAGTCATCAGTTAGATTATAGCAACGACCC
ACACCGGCTATTGAGAGAAGTCGACCGAGTAATGATGGACGATGGCTATATTATTATCACCGGCTTTAACCCTTTTAGTG
TGACTGGGCTTGCCAGTTTGATGCCTTGGCGAAAGAACAGCTTGCCATGGAGTGGGCGTATGTATACGCCAAACCGAATT
AAAGATTGGCTAGGCGTACTTAATTATGAAGTGATTCATTGTGACACCTACGCGTTGTTCCCTATGAGTAAATACCAAGC
GATGTGGACGTGGTTGGAGAACAGCTTAGGCAGCTGCGCATCGTTCGCTGGTAGCCAATACTTTATTGTTGCTCGTAAAC
GTACTTATCCACTTAAGCCTATCAAGCCACATTGGCACCTTAAGCGACGCTTCTCTCCTGTAGGAGCCAGTTTTAGAACC
AATACGCGTCGCACCTTGGACTCCGCTAAAACTTCGTATCCGTTAAAAGCAGAAAAAGCCGACTCATAG

Upstream 100 bases:

>100_bases
AGCCAGATGTAATTGTCGTTAAATGCAGGTATGCTTTTGATATGTAACATTATTGGTTCTCCAGTCACTTTTAGTGAGAC
AGAATAAGTGAGACAGATTA

Downstream 100 bases:

>100_bases
TCGGCTTTCCATTGCTATATGTACCGTCCTAAATATGGTTGACACATTTCCAACATGAAATTGGAGAGTGTCATGAAAAC
AACAAGTAGACGTACTCAAC

Product: SAM-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MMKPARSRKKFERPYTWAQLHNGDWLRESIQTRLDEWCPKLFGYHMLKLGGLSSEISSCTCNIQHQVNLDIQNPLHNVIA
DGYNLPFLEKSFDVVVLSHQLDYSNDPHRLLREVDRVMMDDGYIIITGFNPFSVTGLASLMPWRKNSLPWSGRMYTPNRI
KDWLGVLNYEVIHCDTYALFPMSKYQAMWTWLENSLGSCASFAGSQYFIVARKRTYPLKPIKPHWHLKRRFSPVGASFRT
NTRRTLDSAKTSYPLKAEKADS

Sequences:

>Translated_262_residues
MMKPARSRKKFERPYTWAQLHNGDWLRESIQTRLDEWCPKLFGYHMLKLGGLSSEISSCTCNIQHQVNLDIQNPLHNVIA
DGYNLPFLEKSFDVVVLSHQLDYSNDPHRLLREVDRVMMDDGYIIITGFNPFSVTGLASLMPWRKNSLPWSGRMYTPNRI
KDWLGVLNYEVIHCDTYALFPMSKYQAMWTWLENSLGSCASFAGSQYFIVARKRTYPLKPIKPHWHLKRRFSPVGASFRT
NTRRTLDSAKTSYPLKAEKADS
>Mature_262_residues
MMKPARSRKKFERPYTWAQLHNGDWLRESIQTRLDEWCPKLFGYHMLKLGGLSSEISSCTCNIQHQVNLDIQNPLHNVIA
DGYNLPFLEKSFDVVVLSHQLDYSNDPHRLLREVDRVMMDDGYIIITGFNPFSVTGLASLMPWRKNSLPWSGRMYTPNRI
KDWLGVLNYEVIHCDTYALFPMSKYQAMWTWLENSLGSCASFAGSQYFIVARKRTYPLKPIKPHWHLKRRFSPVGASFRT
NTRRTLDSAKTSYPLKAEKADS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=238, Percent_Identity=40.7563025210084, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 30485; Mature: 30485

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKPARSRKKFERPYTWAQLHNGDWLRESIQTRLDEWCPKLFGYHMLKLGGLSSEISSCT
CCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEE
CNIQHQVNLDIQNPLHNVIADGYNLPFLEKSFDVVVLSHQLDYSNDPHRLLREVDRVMMD
EEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
DGYIIITGFNPFSVTGLASLMPWRKNSLPWSGRMYTPNRIKDWLGVLNYEVIHCDTYALF
CCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCEEEC
PMSKYQAMWTWLENSLGSCASFAGSQYFIVARKRTYPLKPIKPHWHLKRRFSPVGASFRT
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC
NTRRTLDSAKTSYPLKAEKADS
CHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMKPARSRKKFERPYTWAQLHNGDWLRESIQTRLDEWCPKLFGYHMLKLGGLSSEISSCT
CCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEE
CNIQHQVNLDIQNPLHNVIADGYNLPFLEKSFDVVVLSHQLDYSNDPHRLLREVDRVMMD
EEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
DGYIIITGFNPFSVTGLASLMPWRKNSLPWSGRMYTPNRIKDWLGVLNYEVIHCDTYALF
CCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCEEEC
PMSKYQAMWTWLENSLGSCASFAGSQYFIVARKRTYPLKPIKPHWHLKRRFSPVGASFRT
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCC
NTRRTLDSAKTSYPLKAEKADS
CHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]