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The map label for this gene is 218709272

Identifier: 218709272

GI number: 218709272

Start: 1376790

End: 1377257

Strand: Direct

Name: 218709272

Synonym: VS_1279

Alternate gene names: NA

Gene position: 1376790-1377257 (Clockwise)

Preceding gene: 218709271

Following gene: 218709273

Centisome position: 41.73

GC content: 38.03

Gene sequence:

>468_bases
ATGAATGGAAAAATTGTTCGATGGGTTGATGAGAGGGGTTTTGGATTCATCAACTCAGATGAATTAAAGGGCGATATTTT
TGTTCATATATCCAAATTTCGAAAGGGTTATCGTTCTCCAAAAGTGGGAGATAGCGTTGAATTTCAACTATCACATAGTT
CTTCTAAACTCAGCGCTTCGAGTGCTCAGTTAGTTGGTATAGAACCACTCAAATCCAATCCTTTATCACTTATTTTGTCT
GCACTTATCGTTGGTCTTATAGGGGCAGCTTTTTATCTTTTTTTGTTAGAGCCAAAGTTAAATCCGGCATATGAGAGTAT
GGGTTTTAGCTGCCAAGGAAAAATGTACTGCAGTGAGATGTTATCTTGTGATGAAGCAAAGTTTTATTTGGCAAACTGTC
CCAATGTGAAAATAGATGGTGATCGTGATGGTATTCCTTGCGAGAGTCAGTTCTGCAGTCACTATTGA

Upstream 100 bases:

>100_bases
CATCGAGTAATTTGCCCCCACATTAAGCTGTCATAATGTAATCTGCATATTGTTGGTGATATGAGTCAAGAGTTGAAAGC
GGTTTGAAGAAGGGATAGCT

Downstream 100 bases:

>100_bases
TGCCTGTTTACTAGTCATTCAAAATAGACAACTAAAAGGACATTACATGGAAATCAGAGTAGGGACATTACCTGATATTG
CAGGCATCACCGATATCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Cold-Shock Protein; Excalibur Domain Protein; Cold Shock Domain Family Protein

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNGKIVRWVDERGFGFINSDELKGDIFVHISKFRKGYRSPKVGDSVEFQLSHSSSKLSASSAQLVGIEPLKSNPLSLILS
ALIVGLIGAAFYLFLLEPKLNPAYESMGFSCQGKMYCSEMLSCDEAKFYLANCPNVKIDGDRDGIPCESQFCSHY

Sequences:

>Translated_155_residues
MNGKIVRWVDERGFGFINSDELKGDIFVHISKFRKGYRSPKVGDSVEFQLSHSSSKLSASSAQLVGIEPLKSNPLSLILS
ALIVGLIGAAFYLFLLEPKLNPAYESMGFSCQGKMYCSEMLSCDEAKFYLANCPNVKIDGDRDGIPCESQFCSHY
>Mature_155_residues
MNGKIVRWVDERGFGFINSDELKGDIFVHISKFRKGYRSPKVGDSVEFQLSHSSSKLSASSAQLVGIEPLKSNPLSLILS
ALIVGLIGAAFYLFLLEPKLNPAYESMGFSCQGKMYCSEMLSCDEAKFYLANCPNVKIDGDRDGIPCESQFCSHY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17148; Mature: 17148

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKIVRWVDERGFGFINSDELKGDIFVHISKFRKGYRSPKVGDSVEFQLSHSSSKLSAS
CCCCEEEEECCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
SAQLVGIEPLKSNPLSLILSALIVGLIGAAFYLFLLEPKLNPAYESMGFSCQGKMYCSEM
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHH
LSCDEAKFYLANCPNVKIDGDRDGIPCESQFCSHY
CCCCCCEEEEECCCCEEECCCCCCCCCCHHHHCCC
>Mature Secondary Structure
MNGKIVRWVDERGFGFINSDELKGDIFVHISKFRKGYRSPKVGDSVEFQLSHSSSKLSAS
CCCCEEEEECCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCEEEEEECCCCCCCCC
SAQLVGIEPLKSNPLSLILSALIVGLIGAAFYLFLLEPKLNPAYESMGFSCQGKMYCSEM
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHH
LSCDEAKFYLANCPNVKIDGDRDGIPCESQFCSHY
CCCCCCEEEEECCCCEEECCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA