| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709226
Identifier: 218709226
GI number: 218709226
Start: 1307739
End: 1308188
Strand: Direct
Name: 218709226
Synonym: VS_1233
Alternate gene names: NA
Gene position: 1307739-1308188 (Clockwise)
Preceding gene: 218709225
Following gene: 218709231
Centisome position: 39.64
GC content: 43.56
Gene sequence:
>450_bases ATGAGTGAATTACAGAATGGTGCAGCTCAGCAAATTTTGCTCCAACTTTATTGTCGTGAGCAAAATGAGCAGCCGTTAAT CTCTAGAACTGATCTCGACCTTGCTCTTTATGATAGCGAAGGCTTTCTAGCGTGGCGTGATACAAAGCGTGACTTCATTG TCAGTGATATCGAGAATCGAGTTTGGGTGAAGAGCTGCCCCGGCGGTTACATCACTGAAGTGCACTTCAATACTGACGGT TCTCTAATGGAATATCGTTTGTTCGATCGATTTGAAACAACAGGGCAGTGGCAACTAAAAGATGGTTTGTTACACGTCGA GATTTTGAAGGGTGAAAATCGCTACCAGTTTGCTGTTGTGGCTCGTGCTGATCTTAATATTCACTCTGCGGTGGAATATA AAAATGATGAGCTGCACTCGTATTTGAAATTGGTGCAGGCTGAGCGTTAA
Upstream 100 bases:
>100_bases AACTGTATGTGGTTTCTTACGAGCTTGTGTAACCCGCTTTAAATAGAATTTGTTGATCAATACAGCGTCTAACGCAGAGC AATGAGAAAGGGAGGTCACA
Downstream 100 bases:
>100_bases TCCCTTTTAGCCGACCTTGCTTGTCCATTAAAATAAGTGATGTTCCAAGAATAACAAAGCCAACAGTGATGTTGGCTTTG TTGTTTTCAATTCGACTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSELQNGAAQQILLQLYCREQNEQPLISRTDLDLALYDSEGFLAWRDTKRDFIVSDIENRVWVKSCPGGYITEVHFNTDG SLMEYRLFDRFETTGQWQLKDGLLHVEILKGENRYQFAVVARADLNIHSAVEYKNDELHSYLKLVQAER
Sequences:
>Translated_149_residues MSELQNGAAQQILLQLYCREQNEQPLISRTDLDLALYDSEGFLAWRDTKRDFIVSDIENRVWVKSCPGGYITEVHFNTDG SLMEYRLFDRFETTGQWQLKDGLLHVEILKGENRYQFAVVARADLNIHSAVEYKNDELHSYLKLVQAER >Mature_148_residues SELQNGAAQQILLQLYCREQNEQPLISRTDLDLALYDSEGFLAWRDTKRDFIVSDIENRVWVKSCPGGYITEVHFNTDGS LMEYRLFDRFETTGQWQLKDGLLHVEILKGENRYQFAVVARADLNIHSAVEYKNDELHSYLKLVQAER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17403; Mature: 17272
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELQNGAAQQILLQLYCREQNEQPLISRTDLDLALYDSEGFLAWRDTKRDFIVSDIENR CCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCEEEEECCCCCEEEECCCCC VWVKSCPGGYITEVHFNTDGSLMEYRLFDRFETTGQWQLKDGLLHVEILKGENRYQFAVV EEEEECCCCEEEEEEECCCCCEEEEEEHHHHCCCCCEEECCCEEEEEEEECCCCEEEEEE ARADLNIHSAVEYKNDELHSYLKLVQAER EEECCCEEEEEECCCHHHHHHHHHHHCCC >Mature Secondary Structure SELQNGAAQQILLQLYCREQNEQPLISRTDLDLALYDSEGFLAWRDTKRDFIVSDIENR CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCCCEEEEECCCCCEEEECCCCC VWVKSCPGGYITEVHFNTDGSLMEYRLFDRFETTGQWQLKDGLLHVEILKGENRYQFAVV EEEEECCCCEEEEEEECCCCCEEEEEEHHHHCCCCCEEECCCEEEEEEEECCCCEEEEEE ARADLNIHSAVEYKNDELHSYLKLVQAER EEECCCEEEEEECCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA