| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709184
Identifier: 218709184
GI number: 218709184
Start: 1262887
End: 1263546
Strand: Direct
Name: 218709184
Synonym: VS_1191
Alternate gene names: NA
Gene position: 1262887-1263546 (Clockwise)
Preceding gene: 218709182
Following gene: 218709185
Centisome position: 38.28
GC content: 44.24
Gene sequence:
>660_bases ATGATGTTACATGCTCACGAAAATACCCTACATATTACCCACCTCAGTAACCATGCAGTTAAGGAGTTGTCACCTTCATT CTCTAAGCTACCAAGCACAGAGCATGCAGATGGCCAGTTCCGATTGAGAAGGTACTCAGTGGTTGAATTCAGTAATGGAC AAGTCGTTGAGCTAGACAAACATAACTTTGTTCAGTCTGAAAACATTAATCACTTTCAAGGTGATGTTGTTCGTCAGTTC GAGCCGATTGAAGCGAATATTCTAAGCAGCGAAGGCATGCAAGAGATGTGTGAACTGTTTATTGAAACCAACGGGCTTGA AGACGGACAAGAAATCGAAATCCATCAAATCCGCATTGCCGCTATTTTTGAAGAAACTCAGGTTGCACCAGAAGGTGTTC ACCAAGACGGTTTTGACCACATCGCGATCATTGGTGTTACTCGTCACAACATCGTTGGTGGTGAAGTGATGCTTTATCAA GATAGCCACGAAGCGCCATTTTTTAGAAAAGTGTTAGGCGATGGCGAGGTGGCAATGCTTGCTGATAGTAAGCTTTGGCA CAATGCACAACCGATTCGTACCATAGACCACGGCGAGATGGGCTACATGGATGTGTTTGTATTAACGGCTAAGGATGCGC GCAATGTCCTTCACTCTTAA
Upstream 100 bases:
>100_bases TAAATGATTGTTTAATGTTGATTTGGCAAGATCTTCAAGTATCCTTTATGTAAATAAAACGTTAAATATCGAAAGTTAAT TAACAATCATTAAGGAGTCG
Downstream 100 bases:
>100_bases TGACGTGCGCCAACAGTTTAGCGCGTTAGGCCAATATCATAATGGCAAGCCAGTCACTTTCTTTGATGGGCCGGGTGGCT CTCAGGTGCCTGAGAATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MMLHAHENTLHITHLSNHAVKELSPSFSKLPSTEHADGQFRLRRYSVVEFSNGQVVELDKHNFVQSENINHFQGDVVRQF EPIEANILSSEGMQEMCELFIETNGLEDGQEIEIHQIRIAAIFEETQVAPEGVHQDGFDHIAIIGVTRHNIVGGEVMLYQ DSHEAPFFRKVLGDGEVAMLADSKLWHNAQPIRTIDHGEMGYMDVFVLTAKDARNVLHS
Sequences:
>Translated_219_residues MMLHAHENTLHITHLSNHAVKELSPSFSKLPSTEHADGQFRLRRYSVVEFSNGQVVELDKHNFVQSENINHFQGDVVRQF EPIEANILSSEGMQEMCELFIETNGLEDGQEIEIHQIRIAAIFEETQVAPEGVHQDGFDHIAIIGVTRHNIVGGEVMLYQ DSHEAPFFRKVLGDGEVAMLADSKLWHNAQPIRTIDHGEMGYMDVFVLTAKDARNVLHS >Mature_219_residues MMLHAHENTLHITHLSNHAVKELSPSFSKLPSTEHADGQFRLRRYSVVEFSNGQVVELDKHNFVQSENINHFQGDVVRQF EPIEANILSSEGMQEMCELFIETNGLEDGQEIEIHQIRIAAIFEETQVAPEGVHQDGFDHIAIIGVTRHNIVGGEVMLYQ DSHEAPFFRKVLGDGEVAMLADSKLWHNAQPIRTIDHGEMGYMDVFVLTAKDARNVLHS
Specific function: Unknown
COG id: COG4340
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24776; Mature: 24776
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLHAHENTLHITHLSNHAVKELSPSFSKLPSTEHADGQFRLRRYSVVEFSNGQVVELDK CEEECCCCEEEEEECCCHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEEEECCCCEEEECC HNFVQSENINHFQGDVVRQFEPIEANILSSEGMQEMCELFIETNGLEDGQEIEIHQIRIA CCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEE AIFEETQVAPEGVHQDGFDHIAIIGVTRHNIVGGEVMLYQDSHEAPFFRKVLGDGEVAML EEEEHHCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHCCCCEEEE ADSKLWHNAQPIRTIDHGEMGYMDVFVLTAKDARNVLHS ECCCHHCCCCCCEEECCCCCCEEEEEEEECHHHHHHHCC >Mature Secondary Structure MMLHAHENTLHITHLSNHAVKELSPSFSKLPSTEHADGQFRLRRYSVVEFSNGQVVELDK CEEECCCCEEEEEECCCHHHHHCCCCHHHCCCCCCCCCEEEEEEEEEEEECCCCEEEECC HNFVQSENINHFQGDVVRQFEPIEANILSSEGMQEMCELFIETNGLEDGQEIEIHQIRIA CCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEE AIFEETQVAPEGVHQDGFDHIAIIGVTRHNIVGGEVMLYQDSHEAPFFRKVLGDGEVAML EEEEHHCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHCCCCEEEE ADSKLWHNAQPIRTIDHGEMGYMDVFVLTAKDARNVLHS ECCCHHCCCCCCEEECCCCCCEEEEEEEECHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA