Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218709182

Identifier: 218709182

GI number: 218709182

Start: 1258102

End: 1258794

Strand: Direct

Name: 218709182

Synonym: VS_1189

Alternate gene names: NA

Gene position: 1258102-1258794 (Clockwise)

Preceding gene: 218709181

Following gene: 218709184

Centisome position: 38.13

GC content: 39.39

Gene sequence:

>693_bases
ATGATTACAATAGAAAACCCACTACATGTAGAAACACTCTTTTTGACTTGGCAATCTAATAGCGATCGCAATCAGCGCTA
CCTGGTTGGGGTTCTTAAAAAGGCTGCTAGTGGTTTTGAGTTTTCATATTTAGTTGATACACCAGATTATATTACCGCAT
TAGAACATGGCTTTATGGGATACCCCGCATTTCGATTAGGTGGGGAAGTGTATACAAATGATGTAATGACAACCTTTATG
AAAAGGCTTCCGCCTCGTTCGCGACGTGACTTTAGAAAATATCTAACAAACCATTACTTGTCAGAAAATTTTGATGGCAG
TGACTTTGATTTGATTTCTCATACTGGCATTCAACTACCTAGTGATGGTTTTGATTTGGTTCCTGACTTATCAGAAGCAC
AATTACCATTTGATTACTTAATGGAAGTTGCTGGTTCGCGTTACTACATCACTGGTGATGAGGCTGCTTCTATCGGTATA
GGTACACAGGTCAGGTTTGAGTGCGAAAATGATAATGAATTTGACTGTAATGCCGTCGCTCTCTTCATTGGTACGCAACC
GATAGGTTATATAAATAAGTTGATTTGTCCTGCATTTAGAGAATTAATGACACGTGATATTTCATGCCATGTAGCCAAAG
TGTCGGGAACGGTAGACCGCCCGCTCATTTTCGTTATGTTCTCTGCTAAATAA

Upstream 100 bases:

>100_bases
CTAAAATTAAAGCGGAAGTTCCATTTACTCAAGAAAGATTTGAGTGGATTCAAAAGAATCTTAAAGTACGCTTTGAGTTA
ATAAAAGAAGAATTAAAACA

Downstream 100 bases:

>100_bases
TAAAAAAGCCTCCTATCGGAGGCTTTTTTATTTTCGGTGTACTAACAGTGTATATCGATTAAATTACCTGTCGTTATGAA
TCACTGCCTTCAGATAAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM
KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI
GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK

Sequences:

>Translated_230_residues
MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM
KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI
GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK
>Mature_230_residues
MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM
KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI
GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26067; Mature: 26067

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMG
CEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCC
YPAFRLGGEVYTNDVMTTFMKRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLP
CCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC
SDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGIGTQVRFECENDNEFDCNAVA
CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEECCCCEEEEEECCCCCCCCCEEE
LFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK
EEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECC
>Mature Secondary Structure
MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMG
CEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCC
YPAFRLGGEVYTNDVMTTFMKRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLP
CCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC
SDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGIGTQVRFECENDNEFDCNAVA
CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEECCCCEEEEEECCCCCCCCCEEE
LFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK
EEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA