| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709182
Identifier: 218709182
GI number: 218709182
Start: 1258102
End: 1258794
Strand: Direct
Name: 218709182
Synonym: VS_1189
Alternate gene names: NA
Gene position: 1258102-1258794 (Clockwise)
Preceding gene: 218709181
Following gene: 218709184
Centisome position: 38.13
GC content: 39.39
Gene sequence:
>693_bases ATGATTACAATAGAAAACCCACTACATGTAGAAACACTCTTTTTGACTTGGCAATCTAATAGCGATCGCAATCAGCGCTA CCTGGTTGGGGTTCTTAAAAAGGCTGCTAGTGGTTTTGAGTTTTCATATTTAGTTGATACACCAGATTATATTACCGCAT TAGAACATGGCTTTATGGGATACCCCGCATTTCGATTAGGTGGGGAAGTGTATACAAATGATGTAATGACAACCTTTATG AAAAGGCTTCCGCCTCGTTCGCGACGTGACTTTAGAAAATATCTAACAAACCATTACTTGTCAGAAAATTTTGATGGCAG TGACTTTGATTTGATTTCTCATACTGGCATTCAACTACCTAGTGATGGTTTTGATTTGGTTCCTGACTTATCAGAAGCAC AATTACCATTTGATTACTTAATGGAAGTTGCTGGTTCGCGTTACTACATCACTGGTGATGAGGCTGCTTCTATCGGTATA GGTACACAGGTCAGGTTTGAGTGCGAAAATGATAATGAATTTGACTGTAATGCCGTCGCTCTCTTCATTGGTACGCAACC GATAGGTTATATAAATAAGTTGATTTGTCCTGCATTTAGAGAATTAATGACACGTGATATTTCATGCCATGTAGCCAAAG TGTCGGGAACGGTAGACCGCCCGCTCATTTTCGTTATGTTCTCTGCTAAATAA
Upstream 100 bases:
>100_bases CTAAAATTAAAGCGGAAGTTCCATTTACTCAAGAAAGATTTGAGTGGATTCAAAAGAATCTTAAAGTACGCTTTGAGTTA ATAAAAGAAGAATTAAAACA
Downstream 100 bases:
>100_bases TAAAAAAGCCTCCTATCGGAGGCTTTTTTATTTTCGGTGTACTAACAGTGTATATCGATTAAATTACCTGTCGTTATGAA TCACTGCCTTCAGATAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK
Sequences:
>Translated_230_residues MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK >Mature_230_residues MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMGYPAFRLGGEVYTNDVMTTFM KRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLPSDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGI GTQVRFECENDNEFDCNAVALFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26067; Mature: 26067
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMG CEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCC YPAFRLGGEVYTNDVMTTFMKRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLP CCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC SDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGIGTQVRFECENDNEFDCNAVA CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEECCCCEEEEEECCCCCCCCCEEE LFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK EEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECC >Mature Secondary Structure MITIENPLHVETLFLTWQSNSDRNQRYLVGVLKKAASGFEFSYLVDTPDYITALEHGFMG CEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCC YPAFRLGGEVYTNDVMTTFMKRLPPRSRRDFRKYLTNHYLSENFDGSDFDLISHTGIQLP CCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC SDGFDLVPDLSEAQLPFDYLMEVAGSRYYITGDEAASIGIGTQVRFECENDNEFDCNAVA CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCEECCCCEEEEEECCCCCCCCCEEE LFIGTQPIGYINKLICPAFRELMTRDISCHVAKVSGTVDRPLIFVMFSAK EEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA