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The map label for this gene is sohB [H]

Identifier: 218709038

GI number: 218709038

Start: 1090103

End: 1091170

Strand: Direct

Name: sohB [H]

Synonym: VS_1044

Alternate gene names: 218709038

Gene position: 1090103-1091170 (Clockwise)

Preceding gene: 218709033

Following gene: 218709042

Centisome position: 33.04

GC content: 44.66

Gene sequence:

>1068_bases
ATGACATTGGAATTTTTGTTGGACTACGGCTTGTTTTTAGCCAAGATTGCGACCGTTGTAATCGCCATCATTGCAATTTT
AGTGATAGCTAAATCTGTGGGTGGAAAATCAAGCGCGATTAAAGGTGAGCTGGAAATCACGAACCTATCTGAGCACCACA
AACAAACGATTGAACAACTAGAGCACCATTTACATGATGATGCTTTTATCAAAGCACGTGATAAAGCAGAAAAGAAAGCG
GAAAAAGAAAAAGTAAAATCACGTGGCAAAGAAGTGAAGAAAGCAGCGAAAGAGGGTGAGCTTGATAGCAAGCGTGAACC
ACACCTATTCGTTCTTGATTTTAATGGCAGCATTGATGCGAAAGAAGTGGCTTCATTACGTGAAGAGGTAACGGCGGTTC
TGGCTGTTGCTCGTGAAGGTGATGAAGTATTGCTTAAACTGGAATCTGGCGGTGGTATGGTTCACGGCTATGGTCTGGCG
TCTTCTCAACTCGACCGTATCAAAGCAGCAGGCCTGCCTCTGACTATCTCTGTAGACAAAGTAGCCGCGAGTGGTGGTTA
CATGATGGCATGTATCGCAGACAAAATTGTATCTGCACCTTTTGCTATTGTTGGCTCTATTGGTGTTATTGCTCAACTGC
CAAACTTCAATAAATTGCTTAAAAAGCATGACATTGAGTTCGAACAGCTAACGGCGGGTGAGTACAAACGCACGCTTACT
ATGTTTGGTGAGAACAGCGATAAAGCACGCGAGAAGTTTAAAGAAGAGCTCGAAGAGACACATGGCCTATTCAAAGACTT
CATCCGTGACCATCGTCCAGCACTCGATCTTGAAAAAGTAGCAACGGGTGAACACTGGTTTGGTACACAAGCACATGAGC
TTGGGCTGGTGGATGAGATCAGCACTTCTGATGATTTAGTCGTAGCGGCATGTAAGGACAAAACGGTTCTAGCGATTCAC
TACGTACAGAAGAAAAAGCTGTCAGACAAACTAGCGGGCGTGGCAGGTAAATCTGCAGACAGCGTGCTGATGAAGCTGAT
TGAACGCGGCCAAAAGCCGATTGTTTAA

Upstream 100 bases:

>100_bases
CCATTGATGTTTAATCACACAGATAACCGCAGGAATGATGAGAAATTCTTGGTAATCGTGACAAGATGGTTACAATACAC
TAATTCATACAATAGGGGAT

Downstream 100 bases:

>100_bases
GCTTATTTAGTTTTATCTCTAGTATCTAGTATCTAGGTTTAGTGCCTTGCGTCTATTGAAGACGTTTGAGCCTTAAAAAG
AAAGCGCATAAGTCATCAGA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MTLEFLLDYGLFLAKIATVVIAIIAILVIAKSVGGKSSAIKGELEITNLSEHHKQTIEQLEHHLHDDAFIKARDKAEKKA
EKEKVKSRGKEVKKAAKEGELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDEVLLKLESGGGMVHGYGLA
SSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEQLTAGEYKRTLT
MFGENSDKAREKFKEELEETHGLFKDFIRDHRPALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIH
YVQKKKLSDKLAGVAGKSADSVLMKLIERGQKPIV

Sequences:

>Translated_355_residues
MTLEFLLDYGLFLAKIATVVIAIIAILVIAKSVGGKSSAIKGELEITNLSEHHKQTIEQLEHHLHDDAFIKARDKAEKKA
EKEKVKSRGKEVKKAAKEGELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDEVLLKLESGGGMVHGYGLA
SSQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEQLTAGEYKRTLT
MFGENSDKAREKFKEELEETHGLFKDFIRDHRPALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIH
YVQKKKLSDKLAGVAGKSADSVLMKLIERGQKPIV
>Mature_354_residues
TLEFLLDYGLFLAKIATVVIAIIAILVIAKSVGGKSSAIKGELEITNLSEHHKQTIEQLEHHLHDDAFIKARDKAEKKAE
KEKVKSRGKEVKKAAKEGELDSKREPHLFVLDFNGSIDAKEVASLREEVTAVLAVAREGDEVLLKLESGGGMVHGYGLAS
SQLDRIKAAGLPLTISVDKVAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEQLTAGEYKRTLTM
FGENSDKAREKFKEELEETHGLFKDFIRDHRPALDLEKVATGEHWFGTQAHELGLVDEISTSDDLVVAACKDKTVLAIHY
VQKKKLSDKLAGVAGKSADSVLMKLIERGQKPIV

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=353, Percent_Identity=56.0906515580737, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 38817; Mature: 38686

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEFLLDYGLFLAKIATVVIAIIAILVIAKSVGGKSSAIKGELEITNLSEHHKQTIEQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEECCCHHHHHHHHHHH
EHHLHDDAFIKARDKAEKKAEKEKVKSRGKEVKKAAKEGELDSKREPHLFVLDFNGSIDA
HHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH
KEVASLREEVTAVLAVAREGDEVLLKLESGGGMVHGYGLASSQLDRIKAAGLPLTISVDK
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEEEHHH
VAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEQLTAGEYKRTLT
HHCCCCEEHHHHHHHHHHCCHHHHHCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
MFGENSDKAREKFKEELEETHGLFKDFIRDHRPALDLEKVATGEHWFGTQAHELGLVDEI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHCCCHHCC
STSDDLVVAACKDKTVLAIHYVQKKKLSDKLAGVAGKSADSVLMKLIERGQKPIV
CCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLEFLLDYGLFLAKIATVVIAIIAILVIAKSVGGKSSAIKGELEITNLSEHHKQTIEQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEECCCHHHHHHHHHHH
EHHLHDDAFIKARDKAEKKAEKEKVKSRGKEVKKAAKEGELDSKREPHLFVLDFNGSIDA
HHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH
KEVASLREEVTAVLAVAREGDEVLLKLESGGGMVHGYGLASSQLDRIKAAGLPLTISVDK
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHCCCCEEEEHHH
VAASGGYMMACIADKIVSAPFAIVGSIGVIAQLPNFNKLLKKHDIEFEQLTAGEYKRTLT
HHCCCCEEHHHHHHHHHHCCHHHHHCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
MFGENSDKAREKFKEELEETHGLFKDFIRDHRPALDLEKVATGEHWFGTQAHELGLVDEI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHCCCHHCC
STSDDLVVAACKDKTVLAIHYVQKKKLSDKLAGVAGKSADSVLMKLIERGQKPIV
CCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]