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The map label for this gene is rlpA [C]

Identifier: 218708732

GI number: 218708732

Start: 745986

End: 746828

Strand: Reverse

Name: rlpA [C]

Synonym: VS_0711

Alternate gene names: 218708732

Gene position: 746828-745986 (Counterclockwise)

Preceding gene: 218708733

Following gene: 218708731

Centisome position: 22.64

GC content: 42.47

Gene sequence:

>843_bases
TTGATGTCTGTTAAAGTAACTCCTATAAAAACATCTTTGGTTAATGAGCTGCCAATAAAAAAACTAGTGTCTATAGTGAG
CCTAGCCGTTGTTATAAACGGTTGTTCTTCGACAGAACCAACAGGCCGCTACGATATAGATTCAGATATTGCACCAGACG
CACCGATCTCAGTAGAGCATCTCGAGGATGCTCACCCACAGTATGAACCTTATAGTTTAGGTGGTAACACGGATTACACT
TTGCGTGGCGAAGACTACAAGATCGTAAAGAAGACAGAAGGGTTTACTGAGAAAGGCAAAGCCTCTTGGTACGGTAAGAA
ATTTCATGGCCATTTAACGTCGAATGGCGAGATCTACGACATGTATTCGATGTCTGCGGCACACAAAACATTGCCGATTC
CGAGCTATGTAAAAGTGACGAATACCGATAATAACAAAACGACGATTGTGCGCATCAATGACCGAGGCCCATTTCATGAA
GGGCGAATCATTGACCTTAGTTATGCCGCAGCATACAAACTCGATGTATTGAGAACAGGCACGGCAAATGTTGAGATAGA
AGTCATCACTGTGGCTATGCCAACTGACGCAAATAAAAAGGCGGCTTTACCTCAATTTATTATTCAAGTAGCCACTTCCC
CACATGAAGATAGAACCGAGAAGTTAGCCAAAGATCTAGGCGAAAAGTTAGCTGTAGCAACGTTCTTGCAGCCAAATGAT
GATAACTACCGCCTGATGCTTGGCCCATTTCATGACTATGCTCTGACTCAAGAAAAATTAGAACAAGTTAAGCTAATGGG
TTACCCGTCAGCTTATATAAAAAAACACACGCTAACTCGCTAA

Upstream 100 bases:

>100_bases
GGTCAGCTATGGCGGCACCTCTATGGTTACCCTTATGGCTGGTTTCGGTATTTTAATGTCAATCCATACACACAGAAAAG
CATTCTCAAAGGCGACCTAA

Downstream 100 bases:

>100_bases
TTTATCTAACAGTTACTTCTGGTAATCAGCGCTCTGGTGTGACAGAGTGATTCTGTTAATATATGAATAGTTCACCTAAT
AATTGCATTCAAAATGATTA

Product: RlpA-like lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MMSVKVTPIKTSLVNELPIKKLVSIVSLAVVINGCSSTEPTGRYDIDSDIAPDAPISVEHLEDAHPQYEPYSLGGNTDYT
LRGEDYKIVKKTEGFTEKGKASWYGKKFHGHLTSNGEIYDMYSMSAAHKTLPIPSYVKVTNTDNNKTTIVRINDRGPFHE
GRIIDLSYAAAYKLDVLRTGTANVEIEVITVAMPTDANKKAALPQFIIQVATSPHEDRTEKLAKDLGEKLAVATFLQPND
DNYRLMLGPFHDYALTQEKLEQVKLMGYPSAYIKKHTLTR

Sequences:

>Translated_280_residues
MMSVKVTPIKTSLVNELPIKKLVSIVSLAVVINGCSSTEPTGRYDIDSDIAPDAPISVEHLEDAHPQYEPYSLGGNTDYT
LRGEDYKIVKKTEGFTEKGKASWYGKKFHGHLTSNGEIYDMYSMSAAHKTLPIPSYVKVTNTDNNKTTIVRINDRGPFHE
GRIIDLSYAAAYKLDVLRTGTANVEIEVITVAMPTDANKKAALPQFIIQVATSPHEDRTEKLAKDLGEKLAVATFLQPND
DNYRLMLGPFHDYALTQEKLEQVKLMGYPSAYIKKHTLTR
>Mature_280_residues
MMSVKVTPIKTSLVNELPIKKLVSIVSLAVVINGCSSTEPTGRYDIDSDIAPDAPISVEHLEDAHPQYEPYSLGGNTDYT
LRGEDYKIVKKTEGFTEKGKASWYGKKFHGHLTSNGEIYDMYSMSAAHKTLPIPSYVKVTNTDNNKTTIVRINDRGPFHE
GRIIDLSYAAAYKLDVLRTGTANVEIEVITVAMPTDANKKAALPQFIIQVATSPHEDRTEKLAKDLGEKLAVATFLQPND
DNYRLMLGPFHDYALTQEKLEQVKLMGYPSAYIKKHTLTR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=176, Percent_Identity=38.0681818181818, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31180; Mature: 31180

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSVKVTPIKTSLVNELPIKKLVSIVSLAVVINGCSSTEPTGRYDIDSDIAPDAPISVEH
CCEEEEECHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHH
LEDAHPQYEPYSLGGNTDYTLRGEDYKIVKKTEGFTEKGKASWYGKKFHGHLTSNGEIYD
HHCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEE
MYSMSAAHKTLPIPSYVKVTNTDNNKTTIVRINDRGPFHEGRIIDLSYAAAYKLDVLRTG
EEECCCCHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEECC
TANVEIEVITVAMPTDANKKAALPQFIIQVATSPHEDRTEKLAKDLGEKLAVATFLQPND
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEECCCC
DNYRLMLGPFHDYALTQEKLEQVKLMGYPSAYIKKHTLTR
CCEEEEEECCCCHHHCHHHHHHEEECCCCHHHHHHCCCCC
>Mature Secondary Structure
MMSVKVTPIKTSLVNELPIKKLVSIVSLAVVINGCSSTEPTGRYDIDSDIAPDAPISVEH
CCEEEEECHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHH
LEDAHPQYEPYSLGGNTDYTLRGEDYKIVKKTEGFTEKGKASWYGKKFHGHLTSNGEIYD
HHCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEE
MYSMSAAHKTLPIPSYVKVTNTDNNKTTIVRINDRGPFHEGRIIDLSYAAAYKLDVLRTG
EEECCCCHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEECC
TANVEIEVITVAMPTDANKKAALPQFIIQVATSPHEDRTEKLAKDLGEKLAVATFLQPND
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEECCCC
DNYRLMLGPFHDYALTQEKLEQVKLMGYPSAYIKKHTLTR
CCEEEEEECCCCHHHCHHHHHHEEECCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]