Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218708618

Identifier: 218708618

GI number: 218708618

Start: 620632

End: 621132

Strand: Reverse

Name: 218708618

Synonym: VS_0596

Alternate gene names: NA

Gene position: 621132-620632 (Counterclockwise)

Preceding gene: 218708619

Following gene: 218708617

Centisome position: 18.83

GC content: 39.32

Gene sequence:

>501_bases
ATGATATTTATGAGTTTAAAGAAATTGCTGTCCTTAGGTTTTGGCGTGATTCTCGCGCTAATTTTGGTTATTTCAGTCGT
TGCTTCATTACGCTTTTATCAATCGAGTGATGGGTTTAACACCTACCGCTCTCTTGCAATAACAAGTGTCTCAACAGGTC
GAATCCAAGCCAATATTCTGGAAGCTCGTTTATCTGCACTTAAATATATTAAGAACCCTATTCCGTCACATGCTTCTGAA
CTGAATAGACGTATCACCGCATCAAATCAATTGATAGATGAAATATTAGACTCTCATCTTGACGATCTACACAAAAATGA
ATTCCTAACGATAAAGAAGCAGCTTGATCAATATAGCCAAGGCTTTAACAAGGTTGTTCAACTTGTCAATACTCGAAACA
ACCTAGTTCAAGAGGCCTTAGACCCATCAGGGGTCAATATGCGTGAGGCAGTGACCAACCTAATGACCCAAGCTTCAGCT
GAAGAGCTGAAGAAGATTTAG

Upstream 100 bases:

>100_bases
AGATATCAAAATATAGTGGATACATACTATTTATTGATATATTTATCGTTAGAATCATGTAAGAATTTGTTAAGAATAAA
AACAAGCTGCCTTACTAGGA

Downstream 100 bases:

>100_bases
AAGTTGCTGTCAGTTCAGGACAGCTTCAGCAGCATGTATTGCTATCAAGATTGTACGCTTCTAAATTTCTGACGAGCAAT
AAAACAGAAGATGCTCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE
LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA
EELKKI

Sequences:

>Translated_166_residues
MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE
LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA
EELKKI
>Mature_166_residues
MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE
LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA
EELKKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18549; Mature: 18549

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
EARLSALKYIKNPIPSHASELNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASAEELKKI
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
EARLSALKYIKNPIPSHASELNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASAEELKKI
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA