Click here to switch to the map view.

The map label for this gene is lpfA

Identifier: 218697263

GI number: 218697263

Start: 4081934

End: 4082458

Strand: Reverse

Name: lpfA

Synonym: EC55989_4002

Alternate gene names: 218697263

Gene position: 4082458-4081934 (Counterclockwise)

Preceding gene: 218697264

Following gene: 218697262

Centisome position: 79.2

GC content: 45.52

Gene sequence:

>525_bases
ATGAAAAAGGTTCTGTTTGCCTTATCTGCGCTTGCGCTGACCTCTACTTCCGTATTCGCAGCTGATGCGGGCGACGGTAC
TGTTAAATTCACCGGTGAGATTGTTGACGCCGCTTGTGTTGTGTCTCCAGACACTCAAAAACAAGAAGTTGTTCTGGGTC
AGGTGAACAAGTCTGTATTTACTGCTATGGGTGATAAATCCACAGCAACGCCGTTCAAAATCAAACTGGAAAACTGCGAT
ATCTCCACTTTCAAAAATGTGGAAATCAGCTTTAACGGCGTTGGCGATGCAGACAACAGCAAACTGGTTTCTGTAAGCAC
TGAACCAGGTGCCGCAACTGGCGTAGGTATCGGTATTTATGATAACACCAATACCCTGGTTGACCTGAATACTGGTAAAT
CTGCTACTGTCCTGAAAGAAGGTCAGACCGTTCTGTATTTCACCGCTAACTATGTCTCTACCAAAGATGCAGTAACCACG
GGTTACGGTAACGCTGAAGTCGACTTCAACCTGACTTACAACTAA

Upstream 100 bases:

>100_bases
TTCATTAAAAATAATTTTCTTTTTTAGCACCATTTGTATAATCTGCGCCCCGTTGTATGAACAACATCAAGCATATTTAT
CTATATAAATGGAGTTATAA

Downstream 100 bases:

>100_bases
TCGATCCTGACGGAACGATCATCTCTCAATGGCAACAGAGACTGTGTTGCCATTATTCACACCAATGACTCAGGGACCGA
ATCATGAAACGTATTAGCTT

Product: Long polar fimbria protein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKKVLFALSALALTSTSVFAADAGDGTVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTAMGDKSTATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLVSVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVSTKDAVTT
GYGNAEVDFNLTYN

Sequences:

>Translated_174_residues
MKKVLFALSALALTSTSVFAADAGDGTVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTAMGDKSTATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLVSVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVSTKDAVTT
GYGNAEVDFNLTYN
>Mature_174_residues
MKKVLFALSALALTSTSVFAADAGDGTVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVFTAMGDKSTATPFKIKLENCD
ISTFKNVEISFNGVGDADNSKLVSVSTEPGAATGVGIGIYDNTNTLVDLNTGKSATVLKEGQTVLYFTANYVSTKDAVTT
GYGNAEVDFNLTYN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87082421, Length=178, Percent_Identity=33.1460674157303, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI87081753, Length=162, Percent_Identity=38.8888888888889, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87081805, Length=177, Percent_Identity=31.0734463276836, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1787781, Length=174, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1790769, Length=152, Percent_Identity=34.8684210526316, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789422, Length=187, Percent_Identity=33.1550802139037, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790773, Length=161, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1789531, Length=180, Percent_Identity=34.4444444444444, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87081804, Length=181, Percent_Identity=31.4917127071823, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1786938, Length=128, Percent_Identity=29.6875, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18189; Mature: 18189

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLFALSALALTSTSVFAADAGDGTVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEEEEEECCCCCCCEEEEEECCCEEE
TAMGDKSTATPFKIKLENCDISTFKNVEISFNGVGDADNSKLVSVSTEPGAATGVGIGIY
EEECCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEE
DNTNTLVDLNTGKSATVLKEGQTVLYFTANYVSTKDAVTTGYGNAEVDFNLTYN
CCCCEEEEECCCCCEEEEECCCEEEEEEECEECCCCCEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MKKVLFALSALALTSTSVFAADAGDGTVKFTGEIVDAACVVSPDTQKQEVVLGQVNKSVF
CCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEEEEEEECCCCCCCEEEEEECCCEEE
TAMGDKSTATPFKIKLENCDISTFKNVEISFNGVGDADNSKLVSVSTEPGAATGVGIGIY
EEECCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEE
DNTNTLVDLNTGKSATVLKEGQTVLYFTANYVSTKDAVTTGYGNAEVDFNLTYN
CCCCEEEEECCCCCEEEEECCCEEEEEEECEECCCCCEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]