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The map label for this gene is yhjB [H]

Identifier: 218550792

GI number: 218550792

Start: 3579428

End: 3580111

Strand: Reverse

Name: yhjB [H]

Synonym: EFER_3503

Alternate gene names: 218550792

Gene position: 3580111-3579428 (Counterclockwise)

Preceding gene: 218550796

Following gene: 218550789

Centisome position: 78.02

GC content: 46.35

Gene sequence:

>684_bases
ATGGCGAATTCTTATTTTACCTCACGGGTAATACCCTTCCACTCTCTAAGACATTTATCGCATCCCGGTGGAGAAAGAGT
TATGCAAATCGTAATGTTTGACAGGCAGTCAATATTTATTCATGGAATGAAGATCAGTTTATCGCAACGTATTCCAGGTA
TAAGTATCCAGGGTGTCAGTCAGGCAGATGAGCTCTGGCAAAAACTGACAGAAAACCCCGAGGCATTGATGATGCTTGAT
GGTGACCTGGAAATAGAGTTTTGTTACTGGTTACTTGAGAAGACTGTGCAACAATTTCCTCAACTGAAAGTGTTAGTTAC
AGCTTCTGATTGCGGCAAAAAAGGCCTGGCTGAACTCACTCAGTTTAATGTGCTGGCAGTCGTGCCACGAGACTCCGGTG
CCGAAACTTTTGCGTTGGCGCTTAACAGCGTTGTGATGGGCATGATGTTTTTACCCGGTGACTGGCTGAGTATGCCCGAA
ACCGAATCACGGGATATTAAAACACTGAGTGTCCGGCAGCGTGAAATATTAACGATGCTTGCCGCCGGGGAGTCCAATAA
AGAGATTGGGCGGGCGTTAAATATCAGCACCGGAACGGTGAAAGCCCATCTGGAATCACTGTACCGACGGCTGGATGTTA
AAAATCGTACCCAGGCGGCGATGATGTTAAATCACCTTTCCTGA

Upstream 100 bases:

>100_bases
CCAGATTGTGCCCTGACATGTAATTCTGCGACACGACATGTAACTATTTATAACCGTTACTTTTTTCCAGCGTGACTATC
TGTAGAATGGCCCCCGCCAA

Downstream 100 bases:

>100_bases
ATCCTGGGCTTAAAGCCGGGTACTGCCTGGCTTTAAGGTTCACCATAGAGGCTGATTAACCGCCGGACAACACCGTTTGT
CCAGCCAAAACCATCCTGTA

Product: HTH-type transcriptional regulator YhjB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MANSYFTSRVIPFHSLRHLSHPGGERVMQIVMFDRQSIFIHGMKISLSQRIPGISIQGVSQADELWQKLTENPEALMMLD
GDLEIEFCYWLLEKTVQQFPQLKVLVTASDCGKKGLAELTQFNVLAVVPRDSGAETFALALNSVVMGMMFLPGDWLSMPE
TESRDIKTLSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNHLS

Sequences:

>Translated_227_residues
MANSYFTSRVIPFHSLRHLSHPGGERVMQIVMFDRQSIFIHGMKISLSQRIPGISIQGVSQADELWQKLTENPEALMMLD
GDLEIEFCYWLLEKTVQQFPQLKVLVTASDCGKKGLAELTQFNVLAVVPRDSGAETFALALNSVVMGMMFLPGDWLSMPE
TESRDIKTLSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNHLS
>Mature_226_residues
ANSYFTSRVIPFHSLRHLSHPGGERVMQIVMFDRQSIFIHGMKISLSQRIPGISIQGVSQADELWQKLTENPEALMMLDG
DLEIEFCYWLLEKTVQQFPQLKVLVTASDCGKKGLAELTQFNVLAVVPRDSGAETFALALNSVVMGMMFLPGDWLSMPET
ESRDIKTLSVRQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNHLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=197, Percent_Identity=79.6954314720812, Blast_Score=334, Evalue=3e-93,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 25497; Mature: 25366

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSYFTSRVIPFHSLRHLSHPGGERVMQIVMFDRQSIFIHGMKISLSQRIPGISIQGVS
CCCCCCHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEEHHHCCCCCEECCCC
QADELWQKLTENPEALMMLDGDLEIEFCYWLLEKTVQQFPQLKVLVTASDCGKKGLAELT
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
QFNVLAVVPRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTML
HCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNHLS
HCCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ANSYFTSRVIPFHSLRHLSHPGGERVMQIVMFDRQSIFIHGMKISLSQRIPGISIQGVS
CCCCCHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEEHHHCCCCCEECCCC
QADELWQKLTENPEALMMLDGDLEIEFCYWLLEKTVQQFPQLKVLVTASDCGKKGLAELT
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH
QFNVLAVVPRDSGAETFALALNSVVMGMMFLPGDWLSMPETESRDIKTLSVRQREILTML
HCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AAGESNKEIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNHLS
HCCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]