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The map label for this gene is yagS [H]

Identifier: 218550132

GI number: 218550132

Start: 2886878

End: 2887834

Strand: Direct

Name: yagS [H]

Synonym: EFER_2820

Alternate gene names: 218550132

Gene position: 2886878-2887834 (Clockwise)

Preceding gene: 218550131

Following gene: 218550133

Centisome position: 62.91

GC content: 53.92

Gene sequence:

>957_bases
ATGAAAGCTTTTACGTTTGAACGCGCAAACACTCCCGCCGAAGCCGCCGCCAGCGCACAACGTACACCTGGGGCGAAATT
TATTGCTGGTGGAACCAATCTTCTTGATTTGATGAAACTGGAGATTGAAACCCCGACACATCTTATTGATGTCAATCACC
TGGGCATGAATCACATTGAGCCCACTACGGCTGGTGGGCTGCGTATTGGCGCTCTGGTGCGTAATGCTGATCTGGCGGCA
GATGAACGTATTCGCCGGGATTACGCCGTGCTCTCACGGGCATTACTGGCAGGAGCGTCGGCGCAACTGCGTAACCAGGC
AAGCACCGCCGGAAATTTACTCCAGCGTACGCGTTGCCCCTATTTTTATGACACTAATCAGCCGTGTAATAAACGCCAGC
CTGGAAGTGGTTGCGCCGCACTGCATGGCAAAAACCGCCAACTGGCAGTGGTCGGCACCAGCGACGCCTGTATTGCCACA
CATCCCAGCGATATGGCCGTAGCCATGCAATTGCTCGATGCGGTTGTAGAAACCGTGACCCCGGATGGCAGCGAACGGCA
CATTCCACTTAGCGATTTTTATTGCTCTCCCGGCGACTCACCTCAGCGTGAAACGGTATTAACCGCAGGGGAATTGATCG
TCGCCGTCACTTTGCCCCCGCCCATTGTCGGCACACATGTTTATCGCAAAATCCGTGATCGCGCCTCTTATGCCTTTGCA
CTGGTATCTGTGGCCGCCATTATTCAGCCCGATGGAAACGGTCGCGTTGCCTTAGGGGGCGTAGCACACAAACCCTGGCG
TATGAATGAAGCAGATAAACGCATTCCCCTGGGTACAAAGGCGGTTTATGAACAACTGTTCGCTACTGCCCACCCGACTG
CAGAAAATGAATACAAGCTCATTCTGGCGAAGCGCACACTCGCCTCAGTATTAACGCAAGCGGGAGTAACACGATGA

Upstream 100 bases:

>100_bases
CTGACGAAATACGCGAACGCATGAGCGGCAATCTGTGCCGCTGCGGTGCTTACTCCAACATTCTTGCTGCAATTGAGGAT
GTCGCCAGGAGTAAAAAATC

Downstream 100 bases:

>100_bases
AATTTGATAAACCAGCAGGTCAAAACCCTGTTGATCGGCTCCTGGTTGTCGGTCATCCTCATGACCGCATTGATGGTAAA
CGTAAAGTCACTGGTACTGC

Product: xanthine dehydrogenase yagS, FAD binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKAFTFERANTPAEAAASAQRTPGAKFIAGGTNLLDLMKLEIETPTHLIDVNHLGMNHIEPTTAGGLRIGALVRNADLAA
DERIRRDYAVLSRALLAGASAQLRNQASTAGNLLQRTRCPYFYDTNQPCNKRQPGSGCAALHGKNRQLAVVGTSDACIAT
HPSDMAVAMQLLDAVVETVTPDGSERHIPLSDFYCSPGDSPQRETVLTAGELIVAVTLPPPIVGTHVYRKIRDRASYAFA
LVSVAAIIQPDGNGRVALGGVAHKPWRMNEADKRIPLGTKAVYEQLFATAHPTAENEYKLILAKRTLASVLTQAGVTR

Sequences:

>Translated_318_residues
MKAFTFERANTPAEAAASAQRTPGAKFIAGGTNLLDLMKLEIETPTHLIDVNHLGMNHIEPTTAGGLRIGALVRNADLAA
DERIRRDYAVLSRALLAGASAQLRNQASTAGNLLQRTRCPYFYDTNQPCNKRQPGSGCAALHGKNRQLAVVGTSDACIAT
HPSDMAVAMQLLDAVVETVTPDGSERHIPLSDFYCSPGDSPQRETVLTAGELIVAVTLPPPIVGTHVYRKIRDRASYAFA
LVSVAAIIQPDGNGRVALGGVAHKPWRMNEADKRIPLGTKAVYEQLFATAHPTAENEYKLILAKRTLASVLTQAGVTR
>Mature_318_residues
MKAFTFERANTPAEAAASAQRTPGAKFIAGGTNLLDLMKLEIETPTHLIDVNHLGMNHIEPTTAGGLRIGALVRNADLAA
DERIRRDYAVLSRALLAGASAQLRNQASTAGNLLQRTRCPYFYDTNQPCNKRQPGSGCAALHGKNRQLAVVGTSDACIAT
HPSDMAVAMQLLDAVVETVTPDGSERHIPLSDFYCSPGDSPQRETVLTAGELIVAVTLPPPIVGTHVYRKIRDRASYAFA
LVSVAAIIQPDGNGRVALGGVAHKPWRMNEADKRIPLGTKAVYEQLFATAHPTAENEYKLILAKRTLASVLTQAGVTR

Specific function: Unknown

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786479, Length=314, Percent_Identity=79.9363057324841, Blast_Score=516, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 34095; Mature: 34095

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFTFERANTPAEAAASAQRTPGAKFIAGGTNLLDLMKLEIETPTHLIDVNHLGMNHIE
CCCEECCCCCCCHHHHHHHCCCCCCEEEECCCCCEEHHEEEECCCCEEEEECCCCCCCCC
PTTAGGLRIGALVRNADLAADERIRRDYAVLSRALLAGASAQLRNQASTAGNLLQRTRCP
CCCCCCEEEEHEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
YFYDTNQPCNKRQPGSGCAALHGKNRQLAVVGTSDACIATHPSDMAVAMQLLDAVVETVT
EEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
PDGSERHIPLSDFYCSPGDSPQRETVLTAGELIVAVTLPPPIVGTHVYRKIRDRASYAFA
CCCCCCCCCHHHCCCCCCCCCCHHHEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LVSVAAIIQPDGNGRVALGGVAHKPWRMNEADKRIPLGTKAVYEQLFATAHPTAENEYKL
HHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
ILAKRTLASVLTQAGVTR
EEHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAFTFERANTPAEAAASAQRTPGAKFIAGGTNLLDLMKLEIETPTHLIDVNHLGMNHIE
CCCEECCCCCCCHHHHHHHCCCCCCEEEECCCCCEEHHEEEECCCCEEEEECCCCCCCCC
PTTAGGLRIGALVRNADLAADERIRRDYAVLSRALLAGASAQLRNQASTAGNLLQRTRCP
CCCCCCEEEEHEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
YFYDTNQPCNKRQPGSGCAALHGKNRQLAVVGTSDACIATHPSDMAVAMQLLDAVVETVT
EEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHC
PDGSERHIPLSDFYCSPGDSPQRETVLTAGELIVAVTLPPPIVGTHVYRKIRDRASYAFA
CCCCCCCCCHHHCCCCCCCCCCHHHEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
LVSVAAIIQPDGNGRVALGGVAHKPWRMNEADKRIPLGTKAVYEQLFATAHPTAENEYKL
HHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
ILAKRTLASVLTQAGVTR
EEHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]