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The map label for this gene is yagT [H]

Identifier: 218550131

GI number: 218550131

Start: 2886267

End: 2886881

Strand: Direct

Name: yagT [H]

Synonym: EFER_2819

Alternate gene names: 218550131

Gene position: 2886267-2886881 (Clockwise)

Preceding gene: 218550130

Following gene: 218550132

Centisome position: 62.9

GC content: 50.73

Gene sequence:

>615_bases
ATGCGGAGGCCTGGCATGAGCACCCCTGGCAACAATGCTGAAGAGAACCGTCCAGGCAACACCCTGGGCCATCACGATCT
TAGTGTACCCCCTCCCCCCCAATACTTACCTTTAACACTGAATATCAACGGCAAATACCACCAGCTTAAGGTTGATAGCC
GCACCACATTGTTGGATGTTTTACGTGAAAATCTGCAACTGACGGGAACGAAAAAAGGATGTGATCACGGGCAGTGTGGC
GCGTGTACCGTTATCGTCAATGGCCGACGTGTCAATGCCTGCCTGACGCTGGCAATTATGAATCAGGATGCTGATGTCAT
TACCATTGAAGGACTCGGTACGCCAGAAAACCTGCATTTAATGCAAGCGGCCTTTATCAAACATGACGGTTTTCAATGTG
GTTACTGTACCCCCGGACAAATTTGTTCGGCAGTCGCCATGCTGGAAGAGCTTGATGCCGGGATCCCCAGCCACGTAACG
GAAAATTTGCTGACGCCACCAGAACAAACCGCTGACGAAATACGCGAACGCATGAGCGGCAATCTGTGCCGCTGCGGTGC
TTACTCCAACATTCTTGCTGCAATTGAGGATGTCGCCAGGAGTAAAAAATCATGA

Upstream 100 bases:

>100_bases
TGCAAAGATTTAAGAATCATCCCATACCCGTGCCAACTATGCTTAATGTTCAAAAAACGAGCGCGGCGCGGATATAACAC
CATTCTTAAATCAACTTATT

Downstream 100 bases:

>100_bases
AAGCTTTTACGTTTGAACGCGCAAACACTCCCGCCGAAGCCGCCGCCAGCGCACAACGTACACCTGGGGCGAAATTTATT
GCTGGTGGAACCAATCTTCT

Product: xanthine dehydrogenase, iron-sulfur binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MRRPGMSTPGNNAEENRPGNTLGHHDLSVPPPPQYLPLTLNINGKYHQLKVDSRTTLLDVLRENLQLTGTKKGCDHGQCG
ACTVIVNGRRVNACLTLAIMNQDADVITIEGLGTPENLHLMQAAFIKHDGFQCGYCTPGQICSAVAMLEELDAGIPSHVT
ENLLTPPEQTADEIRERMSGNLCRCGAYSNILAAIEDVARSKKS

Sequences:

>Translated_204_residues
MRRPGMSTPGNNAEENRPGNTLGHHDLSVPPPPQYLPLTLNINGKYHQLKVDSRTTLLDVLRENLQLTGTKKGCDHGQCG
ACTVIVNGRRVNACLTLAIMNQDADVITIEGLGTPENLHLMQAAFIKHDGFQCGYCTPGQICSAVAMLEELDAGIPSHVT
ENLLTPPEQTADEIRERMSGNLCRCGAYSNILAAIEDVARSKKS
>Mature_204_residues
MRRPGMSTPGNNAEENRPGNTLGHHDLSVPPPPQYLPLTLNINGKYHQLKVDSRTTLLDVLRENLQLTGTKKGCDHGQCG
ACTVIVNGRRVNACLTLAIMNQDADVITIEGLGTPENLHLMQAAFIKHDGFQCGYCTPGQICSAVAMLEELDAGIPSHVT
ENLLTPPEQTADEIRERMSGNLCRCGAYSNILAAIEDVARSKKS

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=175, Percent_Identity=37.1428571428571, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI71773480, Length=176, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786480, Length=187, Percent_Identity=71.6577540106952, Blast_Score=284, Evalue=3e-78,
Organism=Escherichia coli, GI1789232, Length=171, Percent_Identity=35.672514619883, Blast_Score=100, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI32566215, Length=174, Percent_Identity=35.0574712643678, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17539860, Length=169, Percent_Identity=34.9112426035503, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17540638, Length=173, Percent_Identity=36.4161849710983, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17737937, Length=175, Percent_Identity=36.5714285714286, Blast_Score=93, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24647197, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24647195, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24647199, Length=149, Percent_Identity=34.2281879194631, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24647201, Length=172, Percent_Identity=31.3953488372093, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24647193, Length=174, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 22088; Mature: 22088

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPGMSTPGNNAEENRPGNTLGHHDLSVPPPPQYLPLTLNINGKYHQLKVDSRTTLLDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCHHHHHHH
LRENLQLTGTKKGCDHGQCGACTVIVNGRRVNACLTLAIMNQDADVITIEGLGTPENLHL
HHHCCEECCCCCCCCCCCCCEEEEEECCEEECEEEEEEEECCCCCEEEEECCCCCCHHHH
MQAAFIKHDGFQCGYCTPGQICSAVAMLEELDAGIPSHVTENLLTPPEQTADEIRERMSG
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCC
NLCRCGAYSNILAAIEDVARSKKS
CEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRPGMSTPGNNAEENRPGNTLGHHDLSVPPPPQYLPLTLNINGKYHQLKVDSRTTLLDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCHHHHHHH
LRENLQLTGTKKGCDHGQCGACTVIVNGRRVNACLTLAIMNQDADVITIEGLGTPENLHL
HHHCCEECCCCCCCCCCCCCEEEEEECCEEECEEEEEEEECCCCCEEEEECCCCCCHHHH
MQAAFIKHDGFQCGYCTPGQICSAVAMLEELDAGIPSHVTENLLTPPEQTADEIRERMSG
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCC
NLCRCGAYSNILAAIEDVARSKKS
CEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]