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The map label for this gene is yddQ [C]

Identifier: 218549129

GI number: 218549129

Start: 1831845

End: 1832675

Strand: Reverse

Name: yddQ [C]

Synonym: EFER_1781

Alternate gene names: 218549129

Gene position: 1832675-1831845 (Counterclockwise)

Preceding gene: 218549130

Following gene: 218549128

Centisome position: 39.94

GC content: 50.3

Gene sequence:

>831_bases
ATGCGTTGGAGCGGCCAGATGCTTTATAACCCAGCTCCAGTTCTCCTTCGGCTCTTCGTATCTGCCTCTTTGCTGCTCAT
CATAACCTGTTGTGGCGTGCTGGCATTACAGGACCCCCTGGCAGTTAATCTGTTGGCTCGCCATTTGCCTCCCGATACAC
AACACTGGTTTGGAACGGATAACCTTGGGCGTGATTTATGGATCCGATGCTTTCAGGGAGCATTAACCAGCTTACAAATT
GGTGTTGGCGCTGCGTTATGTAGCGGATTCATTGCGTTAATGATGGCGGCAATTTCGCGGATAAATCGACACTTCGATAC
ACTCGTTCGCCTGCTTACTGATGCAATGTTGTCGATGCCGCATCTACTGCTGTTAATCCTAATTTGCTTTACGTTGGGAG
GGGGGAAAAACGGTGTGATTATGGCCGTCGCGTTTACTCACTGGCCGCGCCTGGCATTGATCCTGCGGGCGGAGGCAGAA
CGGGTGGCGCAGAGTGATTACCTGATGTTAACCCGACGAGCAGGTCGCCGTGCGTTGTATTGCTGGCGTCATCACTATCT
TCCCGCATTACTGCCGCAGTGGCTGACAGGCACTTTGCTTATGTTTCCTCACGCAGTCTTGCATTCGGCAGCCCTGAGTT
TTCTGGGATTTGGCCTCGCACCACATGAACCTTCGCTTGGTTTACTGCTGGCAGATGCATTGCGTTTTATCAGCTACGGT
AACTGGTGGCTGGTTTTATTTCCTGGTTTGATGCTCTTTATTCTGGTGATGTTATTTGATCAACTGGCAAGAGCAGTTCA
GCAGTTATGGTTAAGGAACGATAAATGTTGA

Upstream 100 bases:

>100_bases
CGTGGTGATGTGCCGTTGTTATTGGGCATTGTACTCTTTAGCACGTTGCTGGTTTTTGTGGGGAATAGTCTGTCTGCATG
GCTGGTGAATCGGCTGAATT

Downstream 100 bases:

>100_bases
GTTTGCAACAAGTGACTCTGGAAGTCGCACGCTATCGTTGGTTTGGTGCCAAACGCTGGTCTCCTTTACTGGAGGATATT
TCTTTTGAGCTCGCGCCAGG

Product: inner membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRWSGQMLYNPAPVLLRLFVSASLLLIITCCGVLALQDPLAVNLLARHLPPDTQHWFGTDNLGRDLWIRCFQGALTSLQI
GVGAALCSGFIALMMAAISRINRHFDTLVRLLTDAMLSMPHLLLLILICFTLGGGKNGVIMAVAFTHWPRLALILRAEAE
RVAQSDYLMLTRRAGRRALYCWRHHYLPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISYG
NWWLVLFPGLMLFILVMLFDQLARAVQQLWLRNDKC

Sequences:

>Translated_276_residues
MRWSGQMLYNPAPVLLRLFVSASLLLIITCCGVLALQDPLAVNLLARHLPPDTQHWFGTDNLGRDLWIRCFQGALTSLQI
GVGAALCSGFIALMMAAISRINRHFDTLVRLLTDAMLSMPHLLLLILICFTLGGGKNGVIMAVAFTHWPRLALILRAEAE
RVAQSDYLMLTRRAGRRALYCWRHHYLPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISYG
NWWLVLFPGLMLFILVMLFDQLARAVQQLWLRNDKC
>Mature_276_residues
MRWSGQMLYNPAPVLLRLFVSASLLLIITCCGVLALQDPLAVNLLARHLPPDTQHWFGTDNLGRDLWIRCFQGALTSLQI
GVGAALCSGFIALMMAAISRINRHFDTLVRLLTDAMLSMPHLLLLILICFTLGGGKNGVIMAVAFTHWPRLALILRAEAE
RVAQSDYLMLTRRAGRRALYCWRHHYLPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISYG
NWWLVLFPGLMLFILVMLFDQLARAVQQLWLRNDKC

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=237, Percent_Identity=28.6919831223629, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789889, Length=232, Percent_Identity=29.7413793103448, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787054, Length=219, Percent_Identity=28.7671232876712, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789964, Length=207, Percent_Identity=30.9178743961353, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787549, Length=278, Percent_Identity=24.8201438848921, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788505, Length=186, Percent_Identity=29.5698924731183, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30951; Mature: 30951

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWSGQMLYNPAPVLLRLFVSASLLLIITCCGVLALQDPLAVNLLARHLPPDTQHWFGTD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
NLGRDLWIRCFQGALTSLQIGVGAALCSGFIALMMAAISRINRHFDTLVRLLTDAMLSMP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLLLILICFTLGGGKNGVIMAVAFTHWPRLALILRAEAERVAQSDYLMLTRRAGRRALY
HHHHHHHHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
CWRHHYLPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
NWWLVLFPGLMLFILVMLFDQLARAVQQLWLRNDKC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRWSGQMLYNPAPVLLRLFVSASLLLIITCCGVLALQDPLAVNLLARHLPPDTQHWFGTD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
NLGRDLWIRCFQGALTSLQIGVGAALCSGFIALMMAAISRINRHFDTLVRLLTDAMLSMP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLLLLILICFTLGGGKNGVIMAVAFTHWPRLALILRAEAERVAQSDYLMLTRRAGRRALY
HHHHHHHHHHHCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
CWRHHYLPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
NWWLVLFPGLMLFILVMLFDQLARAVQQLWLRNDKC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA