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The map label for this gene is ydbD [H]

Identifier: 218548946

GI number: 218548946

Start: 1637589

End: 1639895

Strand: Reverse

Name: ydbD [H]

Synonym: EFER_1594

Alternate gene names: 218548946

Gene position: 1639895-1637589 (Counterclockwise)

Preceding gene: 218548947

Following gene: 218548945

Centisome position: 35.74

GC content: 42.96

Gene sequence:

>2307_bases
ATGTTTAAGGCCAGGATTTGCGGCTGGATACGTTTACTTCCCCTGTTTATCCTGAGTCTTCCAGTACAGGCGGAACTTCG
ATGTGTTGCAAATGCAGTTGATATTAATCCATTTTTATCTGCGGCTACCGCTGAAGATAAACAGCAAGTTGAACAAGCTA
TCAACAGTAGCGTGAATCTTGTCCCCTTCGGTTTATCTGCATCGGACTGGAAAGTGCATCGTGGCGATTTAGTGGTAGAA
GGTAATATAGAGAGTAATCAAAAATTGATTGTTCTTGGCAATTTGACAGTCAAAGGTAATATTTCCACTTTCTCTCTTTC
TAATCCATGGGTTATTCTCGGTAACGTGACGGCAACGAATATAGTTACGGATTCACCACTGTTAATTACCGGTTCGATAA
ATGCAAGTGGACTGGTATTTATCGATTCATATTACGATAATCCGTCTACGATTAAGGGGAGTATTAATGCGCGAGGGATA
TTTATCAATGACATAATTGCACCTGTTGTTGTGTCTTCGACAAATAGTGAATTCATGGTCCGTGCGAGTGACAAAAATGA
TACTGAAAATGTCAAAAAAGCGCTGATGATAATAAATCCTGATGCATATCATTGGGGCCTAATAAATGATGAAGATGCTC
TGAAAGAAATTTTTAAGCGAAGCAATATTCGCATGGCAGGGAATGTCTGTAATCAGATGAAAAAAGAAGCGCTGTTTCGC
CCTAAGCCTTCTCCTGAATTAGTGCAGGAATTGCAAATGCTGGATGAAGGCAACGTTGCTGCATTTGAAGGACGAGACAT
TTCGACATTTGATCTTGCCATAATGCGAACTCTCCCAAGACTTAAAGGAATTTCAGCTAACCTACGCAAACAACTTATTA
ATAGCAATGATGAAAAAACGATTGAAAGTATGGCGAGATATATGCCTGACAATGAGATTCTGGAGTTGACCGATCAGCAA
TTAGGTTACCAGCCTGTTGTTTGGGGGGGGCTCGACCGTGAACCGCTCTCTGTCGAAATAATGACGCGAATGAGTCGTCT
ACCCGATGGTGTCGGTCCGTTGAATCTTGCGCTACGTGAAAATCTCCCTCTGGATATCGTCATGACTCTGGCGAAAAGAG
ATTGGGATATGATCATTCAGAAGCTTTATAAAGATGCGTGGTTATTGCCCGAATCCATTATTGATGGCTATATCCGCAGT
GAAGATCCCTCTATTCGTCAGGTCGGTGCTGGAGGACAACTCACCTACAATCAGGCAATGCAGTTGGCGAACGATTCATC
AAACGATGTTGTCACAAGATTAGCGTTCAAGCTGGCAGAGATGAAACACCATGGTCAATTGTTGCGGATGACGCCACAAG
AGAGTGACAAAATAGCAGTATATTTATACCAAAAATTCGAGAGTGACGATGATCTAATAGATGCGTTATTTTTAGCATTG
CCAGATAACTTACAGTTTAATTTTGTTAAAAGGATGGAGAAAAAATCCCCTGCCTACTTTTGCTGTAGGGATATGCAGGT
AATTCACTCTGACGCTGCTTTAGAACGGTTATTGACACTTTTCAACGATCCAGAGGGTTGGAGTAATCTGGCGAAAAATC
AGTATCTGAGCACGTCGATTAAACAAAAAATTTGGCAACGCGCTTTATCGCATCGAAAAAATAATCCGAAAGCAGATTCA
GCAGCATATGAAACCAGTGCTGATATGATTTTGTCTGAGCTGATTAGCCGCGGTGAAGTTGGTGACCAAATGCTATTAAA
TGCCACCTCTCTGATACGTTTGGAAGGCTGGGACTTTTTAGAGAGAGCATTACTTCGTTGGGATAATTTACCCGCTGTGG
TCCTCAAGGAATTACAGCAAAACACGCTACGCAATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAACAGCTCCCGT
GAGCAGGTTAACGAAGCGTTACGTGTTTATTATGCTCTGGACCCCGATGCGTTAGCGCAACTGGATAAACTGGCAAAACA
ACCGGATCGTATATGGTGGAGTACGCTGGCGAAAAGCAATCTCACATTTTTCAAGTTCGGCGCACTTAACAATCGACATA
CGCCACCTGCGGCACTCGCGGCAGAAACTGATCCAGAGTGGCGGATTGTGGCAATGAATAATCCCTGTTTTCCAGTTGAT
GTATTAAAGGCGAGGCTGAAACGTGATCCTTTGCTGGCGTTAGAGCTTGTTAACCCTGAACTGGATTTAGTCCGCCAGCT
GGCGCTTAACGGTAAGACGCGCGCAATACGGGAACAAGCGATGAGAAAACTTGATAAGTTGTATTGA

Upstream 100 bases:

>100_bases
CGTGTTGTCTACGTTGGATGGTATTTCGCGAGAATAACGAATATACAAAAGGGAAAGATGCATTTCCCTTTTGTTTCTTT
TTTAATGGCATGGAGTGCAT

Downstream 100 bases:

>100_bases
ATAACAGCGTAATAATTTTTAACCACTTGATTTATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATA
TTCTGAATTTTTAATGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MFKARICGWIRLLPLFILSLPVQAELRCVANAVDINPFLSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVVSSTNSEFMVRASDKNDTENVKKALMIINPDAYHWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDISTFDLAIMRTLPRLKGISANLRKQLINSNDEKTIESMARYMPDNEILELTDQQ
LGYQPVVWGGLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQKLYKDAWLLPESIIDGYIRS
EDPSIRQVGAGGQLTYNQAMQLANDSSNDVVTRLAFKLAEMKHHGQLLRMTPQESDKIAVYLYQKFESDDDLIDALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALERLLTLFNDPEGWSNLAKNQYLSTSIKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISRGEVGDQMLLNATSLIRLEGWDFLERALLRWDNLPAVVLKELQQNTLRNDIWAKFFLRQENSSR
EQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAALAAETDPEWRIVAMNNPCFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDKLY

Sequences:

>Translated_768_residues
MFKARICGWIRLLPLFILSLPVQAELRCVANAVDINPFLSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVVSSTNSEFMVRASDKNDTENVKKALMIINPDAYHWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDISTFDLAIMRTLPRLKGISANLRKQLINSNDEKTIESMARYMPDNEILELTDQQ
LGYQPVVWGGLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQKLYKDAWLLPESIIDGYIRS
EDPSIRQVGAGGQLTYNQAMQLANDSSNDVVTRLAFKLAEMKHHGQLLRMTPQESDKIAVYLYQKFESDDDLIDALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALERLLTLFNDPEGWSNLAKNQYLSTSIKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISRGEVGDQMLLNATSLIRLEGWDFLERALLRWDNLPAVVLKELQQNTLRNDIWAKFFLRQENSSR
EQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAALAAETDPEWRIVAMNNPCFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDKLY
>Mature_768_residues
MFKARICGWIRLLPLFILSLPVQAELRCVANAVDINPFLSAATAEDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVE
GNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI
FINDIIAPVVVSSTNSEFMVRASDKNDTENVKKALMIINPDAYHWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
PKPSPELVQELQMLDEGNVAAFEGRDISTFDLAIMRTLPRLKGISANLRKQLINSNDEKTIESMARYMPDNEILELTDQQ
LGYQPVVWGGLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQKLYKDAWLLPESIIDGYIRS
EDPSIRQVGAGGQLTYNQAMQLANDSSNDVVTRLAFKLAEMKHHGQLLRMTPQESDKIAVYLYQKFESDDDLIDALFLAL
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALERLLTLFNDPEGWSNLAKNQYLSTSIKQKIWQRALSHRKNNPKADS
AAYETSADMILSELISRGEVGDQMLLNATSLIRLEGWDFLERALLRWDNLPAVVLKELQQNTLRNDIWAKFFLRQENSSR
EQVNEALRVYYALDPDALAQLDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAALAAETDPEWRIVAMNNPCFPVD
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDKLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ykiA [H]

Homologues:

Organism=Escherichia coli, GI87081900, Length=768, Percent_Identity=93.6197916666667, Blast_Score=1465, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86761; Mature: 86761

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKARICGWIRLLPLFILSLPVQAELRCVANAVDINPFLSAATAEDKQQVEQAINSSVNL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVVSSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHEEECCCCCEEE
RASDKNDTENVKKALMIINPDAYHWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCC
PKPSPELVQELQMLDEGNVAAFEGRDISTFDLAIMRTLPRLKGISANLRKQLINSNDEKT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
IESMARYMPDNEILELTDQQLGYQPVVWGGLDREPLSVEIMTRMSRLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQKLYKDAWLLPESIIDGYIRSEDPSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCCCHHEECCCCCEEHHHHH
QLANDSSNDVVTRLAFKLAEMKHHGQLLRMTPQESDKIAVYLYQKFESDDDLIDALFLAL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALERLLTLFNDPEGWSNLAKNQYLSTSI
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSAAYETSADMILSELISRGEVGDQMLLNATSLIRLEGWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHEEEECCHHHH
ERALLRWDNLPAVVLKELQQNTLRNDIWAKFFLRQENSSREQVNEALRVYYALDPDALAQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEECHHHHHH
LDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAALAAETDPEWRIVAMNNPCFPVD
HHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDKLY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKARICGWIRLLPLFILSLPVQAELRCVANAVDINPFLSAATAEDKQQVEQAINSSVNL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCCCEE
VPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN
EEECCCCCCCEEECCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCCEEEEECCEEEE
IVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVVSSTNSEFMV
EECCCCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCEEEHHHHHHHHEEECCCCCEEE
RASDKNDTENVKKALMIINPDAYHWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR
EECCCCCHHHHHEEEEEECCCCEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCC
PKPSPELVQELQMLDEGNVAAFEGRDISTFDLAIMRTLPRLKGISANLRKQLINSNDEKT
CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH
IESMARYMPDNEILELTDQQLGYQPVVWGGLDREPLSVEIMTRMSRLPDGVGPLNLALRE
HHHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHC
NLPLDIVMTLAKRDWDMIIQKLYKDAWLLPESIIDGYIRSEDPSIRQVGAGGQLTYNQAM
CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCHHCCCCCCHHEECCCCCEEHHHHH
QLANDSSNDVVTRLAFKLAEMKHHGQLLRMTPQESDKIAVYLYQKFESDDDLIDALFLAL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHC
PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALERLLTLFNDPEGWSNLAKNQYLSTSI
CCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KQKIWQRALSHRKNNPKADSAAYETSADMILSELISRGEVGDQMLLNATSLIRLEGWDFL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHEEEECCHHHH
ERALLRWDNLPAVVLKELQQNTLRNDIWAKFFLRQENSSREQVNEALRVYYALDPDALAQ
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEEECHHHHHH
LDKLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAALAAETDPEWRIVAMNNPCFPVD
HHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCEEEEEECCCCCCHH
VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDKLY
HHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1665988 [H]