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The map label for this gene is ydcL [H]

Identifier: 218548864

GI number: 218548864

Start: 1544049

End: 1544717

Strand: Direct

Name: ydcL [H]

Synonym: EFER_1509

Alternate gene names: 218548864

Gene position: 1544049-1544717 (Clockwise)

Preceding gene: 218548863

Following gene: 218548865

Centisome position: 33.65

GC content: 45.44

Gene sequence:

>669_bases
ATGCGTACACGTACTGTTTTTAAAATTGCAGTGCTCGTGGGTTTATTGGCTTTGTCTGGTTGTGCGAACAAAATCACTCC
GCCAGATAAATATTCAGGTTTTTTGAAAGACTATTCTTCTTTGAAAGAAACACAATCAGCTACAGGTAAACCAGTTTTAC
GTTGGGTTGATCCTAAATTTAACGATGCCAACTACGACAACATTGTCTGGACGCCGGTAACTTACTATCCAGTGCCGAAA
CCATCGACCCAAATCGGGCAAAATGTCCTCGACCAGTTACGTAGCTACACCGACAATAAATTGAAGACTGCCGTTGCACA
GCGCAAACCATTGGTAACTACTCCAGGGCCACGTAGTTTGATTTTCCGGGGGGCTATTACAGGGGTGAGCTCCAGCAAAG
AGGGGTTACAGTTCTATGAAGTAGTCCCTGTTGCGCTGGTGGTGGCTGGTACGCAAATGGCAACCGGGCACCGCACCATG
GATACCCATCTCTATTTTGAGGGTGAGTTAATTGATGCCGCGACCAACAAACCGGTTGTTAAAGTTGTGCGTCAGGGCGA
AGGGAAAGATCTCAATAATGAAAATACGCCAATGACCATCGAAACGCTGAAAAAAGTTATCGATGATATGGCGACCGATG
CCACTATGTTTGATGTGAGCAAAAAGTAA

Upstream 100 bases:

>100_bases
AGAAATATATGTGAACCTGTTACCATTTTTAGTGCGACAGAAATGATTTCACTTTGCTATTATTTCAAATGCATATCTGA
AAAATCAAAGGGATCATTTC

Downstream 100 bases:

>100_bases
ACGTAATGCGCCATCTTAGGGTGGCGCATTTCACTGTTTATCTTCTTCTCTTTCGCTGGAAAACTATTTCGTACCGTCGC
GCTTCTTACTACAATAACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTRTVFKIAVLVGLLALSGCANKITPPDKYSGFLKDYSSLKETQSATGKPVLRWVDPKFNDANYDNIVWTPVTYYPVPK
PSTQIGQNVLDQLRSYTDNKLKTAVAQRKPLVTTPGPRSLIFRGAITGVSSSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLNNENTPMTIETLKKVIDDMATDATMFDVSKK

Sequences:

>Translated_222_residues
MRTRTVFKIAVLVGLLALSGCANKITPPDKYSGFLKDYSSLKETQSATGKPVLRWVDPKFNDANYDNIVWTPVTYYPVPK
PSTQIGQNVLDQLRSYTDNKLKTAVAQRKPLVTTPGPRSLIFRGAITGVSSSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLNNENTPMTIETLKKVIDDMATDATMFDVSKK
>Mature_222_residues
MRTRTVFKIAVLVGLLALSGCANKITPPDKYSGFLKDYSSLKETQSATGKPVLRWVDPKFNDANYDNIVWTPVTYYPVPK
PSTQIGQNVLDQLRSYTDNKLKTAVAQRKPLVTTPGPRSLIFRGAITGVSSSKEGLQFYEVVPVALVVAGTQMATGHRTM
DTHLYFEGELIDAATNKPVVKVVRQGEGKDLNNENTPMTIETLKKVIDDMATDATMFDVSKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787701, Length=222, Percent_Identity=79.7297297297297, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021747 [H]

Pfam domain/function: PF11769 DUF3313 [H]

EC number: NA

Molecular weight: Translated: 24472; Mature: 24472

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRTVFKIAVLVGLLALSGCANKITPPDKYSGFLKDYSSLKETQSATGKPVLRWVDPKF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
NDANYDNIVWTPVTYYPVPKPSTQIGQNVLDQLRSYTDNKLKTAVAQRKPLVTTPGPRSL
CCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHE
IFRGAITGVSSSKEGLQFYEVVPVALVVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEEECCCCCHHH
KVVRQGEGKDLNNENTPMTIETLKKVIDDMATDATMFDVSKK
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MRTRTVFKIAVLVGLLALSGCANKITPPDKYSGFLKDYSSLKETQSATGKPVLRWVDPKF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
NDANYDNIVWTPVTYYPVPKPSTQIGQNVLDQLRSYTDNKLKTAVAQRKPLVTTPGPRSL
CCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCHHE
IFRGAITGVSSSKEGLQFYEVVPVALVVAGTQMATGHRTMDTHLYFEGELIDAATNKPVV
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCEECEEEEEECEEEECCCCCHHH
KVVRQGEGKDLNNENTPMTIETLKKVIDDMATDATMFDVSKK
HHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]