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The map label for this gene is ydcP [H]

Identifier: 218548865

GI number: 218548865

Start: 1544844

End: 1546805

Strand: Direct

Name: ydcP [H]

Synonym: EFER_1510

Alternate gene names: 218548865

Gene position: 1544844-1546805 (Clockwise)

Preceding gene: 218548864

Following gene: 218548866

Centisome position: 33.67

GC content: 48.32

Gene sequence:

>1962_bases
GTGACCGTATCTTCTCATCGTCTTGAACTGTTAAGCCCGGCACGAGATGCCGCCATTGCCCGCGAAGCTATTTTGCACGG
TGCTGATGCCGTATATATTGGCGGCCCAGGTTTTGGTGCTCGTCATAACGCCAGTAATAGCCTGAAAGATATTGCCGAAC
TGGTGCCGTTCGCTCATCGCTATGGGGCAAAAATTTTCGTCACACTCAACACCATCTTGCATGACGATGAACTGGAACCG
GCGCAGCGGTTGATTACTGACTTGTACCAGACAGGTGTTGATGCCCTGATCGTGCAGGACATGGGAATTCTTGAACTTGA
TATTCCACCAATTGAATTGCACGCCAGTACCCAGTGTGACATTCGCACAGTTGAAAAAGCGAAGTTTCTTGCTGATGTCG
GTTTTACCCAGATTGTGCTGGCGCGTGAACTGAATCTCGAGCAGATCCGCGCCATTCATCAGGCTACAGACGCAACCATT
GAGTTCTTTATTCACGGAGCACTATGCGTAGCGTATTCCGGTCAGTGTTACATCTCTCATGCGCAAACGGGGCGTAGCGC
CAACCGTGGTGATTGTTCACAAGCGTGCCGTTTGCCGTACACCCTGAAAGACGATCAGGGGCGCGTGGTTTCTTATGAAA
AACACCTGCTGTCGATGAAAGATAATGATCAAACCGCTAACCTGGGCGCCTTGATCGATGCTGGTGTGCGTTCCTTCAAG
ATTGAAGGACGATATAAAGATATGAGCTATGTAAAGAATATCACTGCCCATTATCGCCAGATGTTGGATGCCATTATTGA
CGAACGCAGTGATCTGGCAAGGGCTTCATTTGGCCGTACAGAACACTTCTTCGTGCCATCGACAGAAAAAACCTTCCATC
GCGGTAGCACCGACTACTTTGTTAATGCACGTAAAGGTGATATTGGGGCCTTTGACTCACCGAAATTTGTCGGCCTGCCG
GTGGGAGAAGTGTTAAAAGTGGCGAAAGATCACCTTGATGTAGCCACCACCGAACCGTTAGCCAATGGCGATGGCCTGAA
CGTGTTGGTGAAGCGCGAAGTGGTTGGTTTCCGTGCCAATACCGTAGAGAAAACCGGGAACAATCAGTATCGCGTCTGGC
CGAATGAGATGCCTGCGGAAATGCACAAAATTCGTCCCCATCATCCGCTTAATCGCAATCTCGATCATAACTGGCAACAG
GCACTGACTAAAACCTCCAGCGAACGTCGGGTAGGTGTAGACATTGAGCTGGGGGGCTGGCAGGAACAACTTATTCTGAC
ATTGACCAGCGAAGAGGGCGTTAGCATCACGCATACACTGGATGGACAGTTTGATGAAGCGAATAACGCCGAAAAAGCGC
GCAATAACCTGAAAGATGGACTGGCGAAACTGGGGCAGACCATCTATTACGCCCGCAATGTACAAATTAACTTACCGGGG
GCACTCTTTGTGCCAAACAGTCTGTTAAATCAGTTCCGCCGGGAAGCTGTTGAAATGCTTGATGCCGCGCGTCTTGCCAG
TTATCAACGAGGCAGTCGTAAAGCGATCTCTGTGCCCGCGCCTGTCTATCCGCAAACGCATTTAAGTTTCCTGGCTAACG
TCTATAACCATAAAGCCCGTGAGTTTTATCATCGTTATGGTGTGCAATTAATCGATGCCGCATATGAAGCCCATGAAGAA
AAGGGTGAAGTACCGGTAATGATTACTAAACATTGTCTGCGTTTTGCTTTTAATTTGTGTCCGAAACAGGCAAAAGGGAA
TATAAAGAGCTGGAAGGCGACACCCATGCAGTTAGTGAATGGTGATGAAGTATTAACCCTGAAATTTGATTGCCGACCGT
GTGAAATGCACGTAATCGGTAAGATTAAAAATCACATTCTCAAAATGCCATTGCCAGGTAGTGTCGTGGCATCTGTCAGC
CCGGAAGATTTACTTAAAACGTTGCCTAAGCGTAAAAATTAA

Upstream 100 bases:

>100_bases
CATTTCACTGTTTATCTTCTTCTCTTTCGCTGGAAAACTATTTCGTACCGTCGCGCTTCTTACTACAATAACCGCCATTT
TTCAGCTACTGGATAAGAAA

Downstream 100 bases:

>100_bases
TGACAGGCTCCTAAAAAATTACCTTTCGTTATAAGTAGTCAAAAAGGGTCGCCAATTAATAAGCTGGTGGCCTTTTTTAT
TATCTTATTAATATGCGCTA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 652

Protein sequence:

>653_residues
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEP
AQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLADVGFTQIVLARELNLEQIRAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIDERSDLARASFGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFVGLP
VGEVLKVAKDHLDVATTEPLANGDGLNVLVKREVVGFRANTVEKTGNNQYRVWPNEMPAEMHKIRPHHPLNRNLDHNWQQ
ALTKTSSERRVGVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKARNNLKDGLAKLGQTIYYARNVQINLPG
ALFVPNSLLNQFRREAVEMLDAARLASYQRGSRKAISVPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHEE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVS
PEDLLKTLPKRKN

Sequences:

>Translated_653_residues
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEP
AQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLADVGFTQIVLARELNLEQIRAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIDERSDLARASFGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFVGLP
VGEVLKVAKDHLDVATTEPLANGDGLNVLVKREVVGFRANTVEKTGNNQYRVWPNEMPAEMHKIRPHHPLNRNLDHNWQQ
ALTKTSSERRVGVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKARNNLKDGLAKLGQTIYYARNVQINLPG
ALFVPNSLLNQFRREAVEMLDAARLASYQRGSRKAISVPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHEE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVS
PEDLLKTLPKRKN
>Mature_652_residues
TVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPA
QRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCDIRTVEKAKFLADVGFTQIVLARELNLEQIRAIHQATDATIE
FFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFKI
EGRYKDMSYVKNITAHYRQMLDAIIDERSDLARASFGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFVGLPV
GEVLKVAKDHLDVATTEPLANGDGLNVLVKREVVGFRANTVEKTGNNQYRVWPNEMPAEMHKIRPHHPLNRNLDHNWQQA
LTKTSSERRVGVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNAEKARNNLKDGLAKLGQTIYYARNVQINLPGA
LFVPNSLLNQFRREAVEMLDAARLASYQRGSRKAISVPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHEEK
GEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSP
EDLLKTLPKRKN

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=652, Percent_Identity=96.1656441717791, Blast_Score=1317, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=423, Percent_Identity=29.0780141843972, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=32.7645051194539, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 72888; Mature: 72757

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR
CCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRTVEKAKFLADVGFTQIVLARELNLEQIRAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIDERSDLARASFGRTEHFFVPSTEKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFVGLPVGEVLKVAKDHLDVATTEPLANGDGLNVLVKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHCCCCC
TVEKTGNNQYRVWPNEMPAEMHKIRPHHPLNRNLDHNWQQALTKTSSERRVGVDIELGGW
CHHHCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCC
QEQLILTLTSEEGVSITHTLDGQFDEANNAEKARNNLKDGLAKLGQTIYYARNVQINLPG
CEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
ALFVPNSLLNQFRREAVEMLDAARLASYQRGSRKAISVPAPVYPQTHLSFLANVYNHKAR
CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEC
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPEDLLKTLPKRKN
CCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLKDIAELVPFAHR
CCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRTVEKAKFLADVGFTQIVLARELNLEQIRAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIDERSDLARASFGRTEHFFVPSTEKTFHRGSTDYF
ECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFVGLPVGEVLKVAKDHLDVATTEPLANGDGLNVLVKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHCCCCC
TVEKTGNNQYRVWPNEMPAEMHKIRPHHPLNRNLDHNWQQALTKTSSERRVGVDIELGGW
CHHHCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCC
QEQLILTLTSEEGVSITHTLDGQFDEANNAEKARNNLKDGLAKLGQTIYYARNVQINLPG
CEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
ALFVPNSLLNQFRREAVEMLDAARLASYQRGSRKAISVPAPVYPQTHLSFLANVYNHKAR
CEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHEEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVN
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEC
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPLPGSVVASVSPEDLLKTLPKRKN
CCEEEEEEECCCCCCHHHHHHHHHCEEECCCCCCEEECCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]