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The map label for this gene is flgD

Identifier: 21672603

GI number: 21672603

Start: 372773

End: 373453

Strand: Direct

Name: flgD

Synonym: BUsg327

Alternate gene names: 21672603

Gene position: 372773-373453 (Clockwise)

Preceding gene: 21672602

Following gene: 21672604

Centisome position: 58.11

GC content: 26.58

Gene sequence:

>681_bases
ATGGGTACTGTCAATATTAATTCTTCTATAAATAACAACATTATTGAAAATAATACTAATAATGTAAAAAATAATTCTAA
TGCGCTAGACTTACAAAAAAACTTTTTAAGTTTACTAATGGCACAAATGAAAAATCAAGATCCTACAGATCCTATTAAAA
ATAGTGAACTAACATCACAATTAGCTCAAATCAATACAGCAACAGGAATTGAAAGATTAAATAGTACTGTCGGAATATTT
TCTAATAAAATTAATCAAAGTCAAAATATACAGGTATCTTCATTAATTGGACATCATGTAATGATACCTAGTTCTCAAAT
TGTACATACTAAAGGTATTGAAACAAAATATGGGATAGAATTGATTAGTGATGCAACAGCAGTAAATATACAAATAACAG
ACAAAAATGGAAAAATTATACATATTCAAAAAATTAAAAATTTAAAATCCGGTATACACAGTTTAACATGGGATGGTCAA
AATTTAGATAAAGAAGATATGAAAACTGAAAAATACAACGTTACTGTTATAGCTAAAAATCAGAATAGAGAGATTCCTGT
CCAAGTTTTAAGCGAAGCTTTAGTCAATAGCATTATTACTTCTTCTTCCATTGATCCAATTATTGATCTAGGAACAGTAG
GCACTGTAACATTATCAAAAATTCGTAAAATTCTGAAATAA

Upstream 100 bases:

>100_bases
TTTCGGCTTCTAGAAGTTATCAAGCTAATGTAGAAGTATTAAAAACTGCAAAATCTATGATAATGAAAACATTATCAATT
GGAGAATAAAGGAAGAAGAA

Downstream 100 bases:

>100_bases
AGATAATTAAATTTAAAAAAAATGTTATATTTAAAATTATTAAGGAATAAATTATATGTCAATCATAGAAACTATCAATG
GATTAATGATTAATAATGAT

Product: basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MGTVNINSSINNNIIENNTNNVKNNSNALDLQKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIF
SNKINQSQNIQVSSLIGHHVMIPSSQIVHTKGIETKYGIELISDATAVNIQITDKNGKIIHIQKIKNLKSGIHSLTWDGQ
NLDKEDMKTEKYNVTVIAKNQNREIPVQVLSEALVNSIITSSSIDPIIDLGTVGTVTLSKIRKILK

Sequences:

>Translated_226_residues
MGTVNINSSINNNIIENNTNNVKNNSNALDLQKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIF
SNKINQSQNIQVSSLIGHHVMIPSSQIVHTKGIETKYGIELISDATAVNIQITDKNGKIIHIQKIKNLKSGIHSLTWDGQ
NLDKEDMKTEKYNVTVIAKNQNREIPVQVLSEALVNSIITSSSIDPIIDLGTVGTVTLSKIRKILK
>Mature_225_residues
GTVNINSSINNNIIENNTNNVKNNSNALDLQKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFS
NKINQSQNIQVSSLIGHHVMIPSSQIVHTKGIETKYGIELISDATAVNIQITDKNGKIIHIQKIKNLKSGIHSLTWDGQN
LDKEDMKTEKYNVTVIAKNQNREIPVQVLSEALVNSIITSSSIDPIIDLGTVGTVTLSKIRKILK

Specific function: Required for flagellar hook formation. May act as a scaffolding protein

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family

Homologues:

Organism=Escherichia coli, GI1787315, Length=205, Percent_Identity=46.3414634146341, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGD_BUCAP (Q8K9K7)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660670.1
- EnsemblBacteria:   EBBUCT00000000042
- GeneID:   1005535
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg327
- GeneTree:   EBGT00050000007741
- HOGENOM:   HBG691812
- OMA:   LDNAQVT
- ProtClustDB:   CLSK315898
- BioCyc:   BAPH198804:BUSG327-MONOMER
- InterPro:   IPR005648

Pfam domain/function: PF03963 FlgD

EC number: NA

Molecular weight: Translated: 24836; Mature: 24705

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTVNINSSINNNIIENNTNNVKNNSNALDLQKNFLSLLMAQMKNQDPTDPIKNSELTSQ
CCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LAQINTATGIERLNSTVGIFSNKINQSQNIQVSSLIGHHVMIPSSQIVHTKGIETKYGIE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCEEECCCCCEEEECCCCCHHCEE
LISDATAVNIQITDKNGKIIHIQKIKNLKSGIHSLTWDGQNLDKEDMKTEKYNVTVIAKN
EECCCEEEEEEEECCCCCEEEHHHHHHHHHHHHEECCCCCCCCHHHCCCCEEEEEEEECC
QNREIPVQVLSEALVNSIITSSSIDPIIDLGTVGTVTLSKIRKILK
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
GTVNINSSINNNIIENNTNNVKNNSNALDLQKNFLSLLMAQMKNQDPTDPIKNSELTSQ
CEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LAQINTATGIERLNSTVGIFSNKINQSQNIQVSSLIGHHVMIPSSQIVHTKGIETKYGIE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCEEECCCCCEEEECCCCCHHCEE
LISDATAVNIQITDKNGKIIHIQKIKNLKSGIHSLTWDGQNLDKEDMKTEKYNVTVIAKN
EECCCEEEEEEEECCCCCEEEHHHHHHHHHHHHEECCCCCCCCHHHCCCCEEEEEEEECC
QNREIPVQVLSEALVNSIITSSSIDPIIDLGTVGTVTLSKIRKILK
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438