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The map label for this gene is sodA

Identifier: 21672470

GI number: 21672470

Start: 205283

End: 205894

Strand: Direct

Name: sodA

Synonym: BUsg183

Alternate gene names: 21672470

Gene position: 205283-205894 (Clockwise)

Preceding gene: 21672468

Following gene: 30410817

Centisome position: 32.0

GC content: 26.47

Gene sequence:

>612_bases
ATGTCTTATTCCCTACCTGATCTATCTTATGCATATAATGCTTTAGAACCTTTTTTTGATGAAGAAACAATGAGAATTCA
TCATACGAAACATCATCAAAATTATATTAATAATACTAATTCTATTTTAGAAAGAACAAATTTTTCTTCACTTTCAATTG
AAGAGTTAATGTCTATTTTTAATGAAATAAGTTTAGAAAATAAAAATGTATTACGTAATAATGCAGGAGGACATATAAAT
CATAGTTTATTTTGGAAAGGTTTAAAAATTGGAACAATATTGCAAGGTGATTTAAAATCAGAAATTAACAAACAATTTGG
AAGTGTTGAATATTTCAAGAGTAAATTTGAAGATATTGCGTTAAACCACTTTGGTTCAGGTTGGATTTGGTTAGTAAATC
AAAATGGTATACTATCTATAGTATCTACAATAAATCAAGATAATCCATTAATGGGTAAATCAATATCTGGTACTCATGGT
AATCCTATTTTCGGATTAGATCTTTGGGAACATGCTTATTATTTAAAATATCAAAATAGACGATTAGATTATATTAAATC
TTTTTGGAATGTAGTAAATTGGGATGAAGCATCTCGTCGTTTGTCCAAATAG

Upstream 100 bases:

>100_bases
CAACCTAATAATTGTACTATAATTTAATAAAATATTTAAGATTAAATTACTAATTTCATCTTAAATTTATTATTTTATTT
TTTTATTTATAGGAAAAAAA

Downstream 100 bases:

>100_bases
TTTTTAATTACTTTTAATGTATAATTATTTTTAATATAAATCTTTAATTAATAAATGTTTTAAAATAAAAACATATAATA
TTTAATATTATATGTTTTTC

Product: superoxide dismutase [Mn]

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSYSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIFNEISLENKNVLRNNAGGHIN
HSLFWKGLKIGTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIVSTINQDNPLMGKSISGTHG
NPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEASRRLSK

Sequences:

>Translated_203_residues
MSYSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIFNEISLENKNVLRNNAGGHIN
HSLFWKGLKIGTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIVSTINQDNPLMGKSISGTHG
NPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEASRRLSK
>Mature_202_residues
SYSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIFNEISLENKNVLRNNAGGHINH
SLFWKGLKIGTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIVSTINQDNPLMGKSISGTHGN
PIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEASRRLSK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=42.0792079207921, Blast_Score=154, Evalue=5e-38,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=42.0792079207921, Blast_Score=154, Evalue=5e-38,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=35, Blast_Score=120, Evalue=6e-28,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=63.5467980295566, Blast_Score=285, Evalue=1e-78,
Organism=Escherichia coli, GI1787946, Length=205, Percent_Identity=39.0243902439024, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=205, Percent_Identity=39.0243902439024, Blast_Score=149, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17506561, Length=206, Percent_Identity=38.8349514563107, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=36.1904761904762, Blast_Score=132, Evalue=3e-32,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=40.4878048780488, Blast_Score=149, Evalue=1e-36,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_BUCAP (Q8K9V4)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660537.1
- ProteinModelPortal:   Q8K9V4
- SMR:   Q8K9V4
- EnsemblBacteria:   EBBUCT00000000221
- GeneID:   1005380
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg183
- GeneTree:   EBGT00050000008170
- HOGENOM:   HBG507761
- OMA:   SILERTN
- ProtClustDB:   CLSK315775
- BioCyc:   BAPH198804:BUSG183-MONOMER
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 23593; Mature: 23462

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIF
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHH
NEISLENKNVLRNNAGGHINHSLFWKGLKIGTILQGDLKSEINKQFGSVEYFKSKFEDIA
HHHCCCCCHHHHCCCCCCCCHHHHCCCCEECEEECCHHHHHHHHHHCCHHHHHHHHHHHH
LNHFGSGWIWLVNQNGILSIVSTINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNR
HHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHEEEEECCC
RLDYIKSFWNVVNWDEASRRLSK
HHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure 
SYSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIF
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHH
NEISLENKNVLRNNAGGHINHSLFWKGLKIGTILQGDLKSEINKQFGSVEYFKSKFEDIA
HHHCCCCCHHHHCCCCCCCCHHHHCCCCEECEEECCHHHHHHHHHHCCHHHHHHHHHHHH
LNHFGSGWIWLVNQNGILSIVSTINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNR
HHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHEEEEECCC
RLDYIKSFWNVVNWDEASRRLSK
HHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438