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The map label for this gene is ydhD

Identifier: 21672468

GI number: 21672468

Start: 203859

End: 204182

Strand: Direct

Name: ydhD

Synonym: BUsg181

Alternate gene names: 21672468

Gene position: 203859-204182 (Clockwise)

Preceding gene: 21672467

Following gene: 21672470

Centisome position: 31.78

GC content: 28.09

Gene sequence:

>324_bases
ATGAATGTAATTGAAAAGATAGAACGTCAAATTAAAGATAATATTATTTTAATTTATATGAAGGGTACACCTCAATCTCC
TAGTTGTGGTTTTTCAGCTCAAGCAGTACAAGCTTTATCTATTTGTGGAGAAAAATTTGCATATGTTGATATTTTAGAAA
ATTTAGATATTAGAAAAGAATTACCAAGATACGCTAATTGGCCAACTTTTCCTCAGTTATGGATAAAGGGAGAGTTAATT
GGTGGATGCAGTATTATACTCGAAATGTTAGAAAACGGAGAACTAAAAAAAATAATATCTAATGCAGTATTAAATTCTAA
ATAA

Upstream 100 bases:

>100_bases
TATTTAGTATTGCAAAAAAAAATGAAATTGTCTATAAAATTTTTTTAAAAGTGTTTTTTAATAAAGCATTTTATTTCTTT
AACTTTATTTTGGAAAAAAT

Downstream 100 bases:

>100_bases
TAAATTTAAACAAAATAAGATATGACATTATGTAAAAATCAGAATTGTTATTATTAATGTCATATCTTTTTTTATAAAAA
GTTTAAAAATATTTTTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Grx4; Monothiol glutaredoxin

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MNVIEKIERQIKDNIILIYMKGTPQSPSCGFSAQAVQALSICGEKFAYVDILENLDIRKELPRYANWPTFPQLWIKGELI
GGCSIILEMLENGELKKIISNAVLNSK

Sequences:

>Translated_107_residues
MNVIEKIERQIKDNIILIYMKGTPQSPSCGFSAQAVQALSICGEKFAYVDILENLDIRKELPRYANWPTFPQLWIKGELI
GGCSIILEMLENGELKKIISNAVLNSK
>Mature_107_residues
MNVIEKIERQIKDNIILIYMKGTPQSPSCGFSAQAVQALSICGEKFAYVDILENLDIRKELPRYANWPTFPQLWIKGELI
GGCSIILEMLENGELKKIISNAVLNSK

Specific function: Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters

COG id: COG0278

COG function: function code O; Glutaredoxin-related protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutaredoxin domain

Homologues:

Organism=Homo sapiens, GI42516576, Length=109, Percent_Identity=39.4495412844037, Blast_Score=96, Evalue=5e-21,
Organism=Homo sapiens, GI95113651, Length=84, Percent_Identity=46.4285714285714, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787943, Length=106, Percent_Identity=66.0377358490566, Blast_Score=161, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI17556042, Length=105, Percent_Identity=32.3809523809524, Blast_Score=85, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71988159, Length=92, Percent_Identity=38.0434782608696, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988153, Length=92, Percent_Identity=38.0434782608696, Blast_Score=78, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6325198, Length=99, Percent_Identity=38.3838383838384, Blast_Score=84, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6321022, Length=76, Percent_Identity=44.7368421052632, Blast_Score=83, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6320303, Length=76, Percent_Identity=46.0526315789474, Blast_Score=82, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24642023, Length=89, Percent_Identity=39.3258426966292, Blast_Score=95, Evalue=9e-21,
Organism=Drosophila melanogaster, GI19921242, Length=95, Percent_Identity=38.9473684210526, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLRX4_BUCAP (Q8K9V6)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660535.1
- ProteinModelPortal:   Q8K9V6
- SMR:   Q8K9V6
- EnsemblBacteria:   EBBUCT00000000513
- GeneID:   1005378
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg181
- GeneTree:   EBGT00050000007929
- HOGENOM:   HBG728471
- OMA:   ILIELYQ
- ProtClustDB:   CLSK315772
- BioCyc:   BAPH198804:BUSG181-MONOMER
- GO:   GO:0005737
- InterPro:   IPR002109
- InterPro:   IPR014434
- InterPro:   IPR004480
- InterPro:   IPR012336
- InterPro:   IPR012335
- Gene3D:   G3DSA:3.40.30.10
- PANTHER:   PTHR10293
- PIRSF:   PIRSF005894
- TIGRFAMs:   TIGR00365

Pfam domain/function: PF00462 Glutaredoxin; SSF52833 Thiordxn-like_fd

EC number: NA

Molecular weight: Translated: 12055; Mature: 12055

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS51354 GLUTAREDOXIN_2

Important sites: BINDING 21-21 BINDING 58-58 BINDING 70-70

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIEKIERQIKDNIILIYMKGTPQSPSCGFSAQAVQALSICGEKFAYVDILENLDIRKE
CCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHH
LPRYANWPTFPQLWIKGELIGGCSIILEMLENGELKKIISNAVLNSK
CCCCCCCCCCCHHEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNVIEKIERQIKDNIILIYMKGTPQSPSCGFSAQAVQALSICGEKFAYVDILENLDIRKE
CCHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHH
LPRYANWPTFPQLWIKGELIGGCSIILEMLENGELKKIISNAVLNSK
CCCCCCCCCCCHHEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438