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The map label for this gene is smpA

Identifier: 21672467

GI number: 21672467

Start: 203016

End: 203330

Strand: Direct

Name: smpA

Synonym: BUsg180

Alternate gene names: 21672467

Gene position: 203016-203330 (Clockwise)

Preceding gene: 21672466

Following gene: 21672468

Centisome position: 31.65

GC content: 20.32

Gene sequence:

>315_bases
ATGAGTAATCAGATTGTTTTAGGAATGTTAATGATTTTTTTATTCTCGAGTTGTTCAGTATTAGAGAATAAACACTATGT
TTTAAATAATAATTTAAATGAGTCTTATTTTAATTTAAATAAATTTAAAAAAAATTATAAAGGAATGACAAAAGAACAAA
TAATTTATATTTTTGGAAATCCAATTATTTCAGATTCCTTTAATGATGTTTTTCACTATATTATTTGTGCAGAAGAAAAC
GGATTTGGATGTCATCAAAAGATACTAAACATATTTTTTAAAAAAAATAAAGTGTCAAAATTAGATATTCGATAA

Upstream 100 bases:

>100_bases
AATTTTTTTAGATTATTAAAGATTTTTATAAAATTTTTTTATAGTTAAAGATTGTTATTAACAATATTTCATATAAAATA
TTATAGGTAGTGATTTTTTT

Downstream 100 bases:

>100_bases
TTTATAAGTAATAATTATTTTTTTTAATTTTTTTGGAGCTGGCGGGATTTGAACCCGCGTCCAAAATTTCTATAAATAAA
GATACTACATGCTTAGTTTT

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSNQIVLGMLMIFLFSSCSVLENKHYVLNNNLNESYFNLNKFKKNYKGMTKEQIIYIFGNPIISDSFNDVFHYIICAEEN
GFGCHQKILNIFFKKNKVSKLDIR

Sequences:

>Translated_104_residues
MSNQIVLGMLMIFLFSSCSVLENKHYVLNNNLNESYFNLNKFKKNYKGMTKEQIIYIFGNPIISDSFNDVFHYIICAEEN
GFGCHQKILNIFFKKNKVSKLDIR
>Mature_103_residues
SNQIVLGMLMIFLFSSCSVLENKHYVLNNNLNESYFNLNKFKKNYKGMTKEQIIYIFGNPIISDSFNDVFHYIICAEENG
FGCHQKILNIFFKKNKVSKLDIR

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SMPA_BUCAP (Q8K9V7)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660534.1
- ProteinModelPortal:   Q8K9V7
- EnsemblBacteria:   EBBUCT00000000543
- GeneID:   1005377
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg180
- GeneTree:   EBGT00050000007845
- OMA:   ICAEENG
- ProtClustDB:   CLSK315771
- BioCyc:   BAPH198804:BUSG180-MONOMER
- InterPro:   IPR007450

Pfam domain/function: PF04355 SmpA_OmlA

EC number: NA

Molecular weight: Translated: 12213; Mature: 12082

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQIVLGMLMIFLFSSCSVLENKHYVLNNNLNESYFNLNKFKKNYKGMTKEQIIYIFGN
CCCCHHHHHHHHHHHCCCHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
PIISDSFNDVFHYIICAEENGFGCHQKILNIFFKKNKVSKLDIR
CCCCCCHHCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure 
SNQIVLGMLMIFLFSSCSVLENKHYVLNNNLNESYFNLNKFKKNYKGMTKEQIIYIFGN
CCCHHHHHHHHHHHCCCHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
PIISDSFNDVFHYIICAEENGFGCHQKILNIFFKKNKVSKLDIR
CCCCCCHHCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438