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The map label for this gene is ydgO

Identifier: 21672399

GI number: 21672399

Start: 121037

End: 122086

Strand: Direct

Name: ydgO

Synonym: BUsg108

Alternate gene names: 21672399

Gene position: 121037-122086 (Clockwise)

Preceding gene: 21672398

Following gene: 21672400

Centisome position: 18.87

GC content: 24.95

Gene sequence:

>1050_bases
ATGAAATTAAAAAAAATGAATCTACCTTATATAAGTAATACCTATGATGTAAGAAAAATAATGTTTTTAGTTGTTTTATC
TTGTATCCCAGGATTATGTACTGAAATTTATTTTTTTGGATGTGGTGTCTTAATACAAACATTATTATTTGTGATAATTT
CCTTATTATTTGAGATAATAATTTTAAAAATGAGACGTAAAAATATTAAAAATAGTTTATTTGATTATTCATCATTTTTA
ACTGCAGTATTACTTGGATTAAGTACTCCCTGTGCACTTCCTTGGTGGATGATAATTTTCAGCTGTTTTTTTGCTATTGT
TATTTCAAAATATTTATATGGAGGTCTTGGGCAAAATATATTCAATCCAGCTATGATTGGTTATGTAGTGCTATTGATAT
CTTTTCCTGTACATATGACTGCTTGGAATGAAAAAAACTCTTCTTTATCTTTTTACAATGATATAAAAAAATCTATAAAT
TTAATTTTATTCTACAACAAATTGAATAATTCTAAAAAAAAAATTTGTCCTGATAACTTTACGGAAGCCACACCTTTAGA
TGATTTCAAAACTAAATCTCATTTTGATTATGATTTTTTTCCAGAAGAATCAGCAGTGAAAAAAAAAACAAAGATTGTTT
CAATAGCTTGGAAATATATAAATATAAGTTTTTTAATAGGAGGATGTTTTCTATTATATAAAAAAGTTATTTGTTGGCGT
ATTCCATTGAGTTTTTTATCCAGCTTAATTTTTTTTTCAAGCATAACTTATTTTTATTCACAAAAATTTTTTTGTTCTCC
TTTATTTCATCTTTTTTCTGGAGGAACAATGATGTGTGCTTTTTTTATAGCTACTGATCCTGTAACAACTTCTTGTACTA
AAATAGGAAAAATATTTTTTGGTTTAATTATTGGTTTTTTAGTCTGGATAATTCGAAATTATAGTGATTATCCAGATGGC
ATTGCTTTTTCAGTATTATTTGCTAATATGATTGTTCCATTAATGGATGCTTATTTAAAGACATCTGGATATGGTCATAA
AAATTTATGA

Upstream 100 bases:

>100_bases
AGAAAAATCTCTTAGGAAAGAAATGTTAAAAGAAGCAATAAAACGCGCAAGATTAAAAAAATAAAGTTTTATATCAATAT
TTCTTTTTTTCTATAAATAT

Downstream 100 bases:

>100_bases
AATCTTTTAAAGAAACTATAATAAATGCATGTTTAATGGGATTTTTTTCTTTTTTTTCTCTTTCAAGTGTCATTTTTGTT
AAAAACATAACAAATAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKLKKMNLPYISNTYDVRKIMFLVVLSCIPGLCTEIYFFGCGVLIQTLLFVIISLLFEIIILKMRRKNIKNSLFDYSSFL
TAVLLGLSTPCALPWWMIIFSCFFAIVISKYLYGGLGQNIFNPAMIGYVVLLISFPVHMTAWNEKNSSLSFYNDIKKSIN
LILFYNKLNNSKKKICPDNFTEATPLDDFKTKSHFDYDFFPEESAVKKKTKIVSIAWKYINISFLIGGCFLLYKKVICWR
IPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFFGLIIGFLVWIIRNYSDYPDG
IAFSVLFANMIVPLMDAYLKTSGYGHKNL

Sequences:

>Translated_349_residues
MKLKKMNLPYISNTYDVRKIMFLVVLSCIPGLCTEIYFFGCGVLIQTLLFVIISLLFEIIILKMRRKNIKNSLFDYSSFL
TAVLLGLSTPCALPWWMIIFSCFFAIVISKYLYGGLGQNIFNPAMIGYVVLLISFPVHMTAWNEKNSSLSFYNDIKKSIN
LILFYNKLNNSKKKICPDNFTEATPLDDFKTKSHFDYDFFPEESAVKKKTKIVSIAWKYINISFLIGGCFLLYKKVICWR
IPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFFGLIIGFLVWIIRNYSDYPDG
IAFSVLFANMIVPLMDAYLKTSGYGHKNL
>Mature_349_residues
MKLKKMNLPYISNTYDVRKIMFLVVLSCIPGLCTEIYFFGCGVLIQTLLFVIISLLFEIIILKMRRKNIKNSLFDYSSFL
TAVLLGLSTPCALPWWMIIFSCFFAIVISKYLYGGLGQNIFNPAMIGYVVLLISFPVHMTAWNEKNSSLSFYNDIKKSIN
LILFYNKLNNSKKKICPDNFTEATPLDDFKTKSHFDYDFFPEESAVKKKTKIVSIAWKYINISFLIGGCFLLYKKVICWR
IPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFFGLIIGFLVWIIRNYSDYPDG
IAFSVLFANMIVPLMDAYLKTSGYGHKNL

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=348, Percent_Identity=41.6666666666667, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_BUCAP (Q8KA19)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660466.1
- EnsemblBacteria:   EBBUCT00000000052
- GeneID:   1005925
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg108
- GeneTree:   EBGT00050000008165
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   CLSK315389
- BioCyc:   BAPH198804:BUSG108-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 40056; Mature: 40056

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x4048c7b0)-; HASH(0xbc0ddec)-; HASH(0xb86c03c)-; HASH(0xbbdd90c)-; HASH(0xad45b1c)-; HASH(0xb85e4a4)-; HASH(0xb7efb78)-; HASH(0xacff250)-; HASH(0x40470250)-;

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKKMNLPYISNTYDVRKIMFLVVLSCIPGLCTEIYFFGCGVLIQTLLFVIISLLFEII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKMRRKNIKNSLFDYSSFLTAVLLGLSTPCALPWWMIIFSCFFAIVISKYLYGGLGQNI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FNPAMIGYVVLLISFPVHMTAWNEKNSSLSFYNDIKKSINLILFYNKLNNSKKKICPDNF
CCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCC
TEATPLDDFKTKSHFDYDFFPEESAVKKKTKIVSIAWKYINISFLIGGCFLLYKKVICWR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHH
GLIIGFLVWIIRNYSDYPDGIAFSVLFANMIVPLMDAYLKTSGYGHKNL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure
MKLKKMNLPYISNTYDVRKIMFLVVLSCIPGLCTEIYFFGCGVLIQTLLFVIISLLFEII
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKMRRKNIKNSLFDYSSFLTAVLLGLSTPCALPWWMIIFSCFFAIVISKYLYGGLGQNI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FNPAMIGYVVLLISFPVHMTAWNEKNSSLSFYNDIKKSINLILFYNKLNNSKKKICPDNF
CCHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCC
TEATPLDDFKTKSHFDYDFFPEESAVKKKTKIVSIAWKYINISFLIGGCFLLYKKVICWR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLSFLSSLIFFSSITYFYSQKFFCSPLFHLFSGGTMMCAFFIATDPVTTSCTKIGKIFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHH
GLIIGFLVWIIRNYSDYPDGIAFSVLFANMIVPLMDAYLKTSGYGHKNL
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12089438