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The map label for this gene is ydgM

Identifier: 21672398

GI number: 21672398

Start: 118850

End: 119356

Strand: Direct

Name: ydgM

Synonym: BUsg106

Alternate gene names: 21672398

Gene position: 118850-119356 (Clockwise)

Preceding gene: 21672397

Following gene: 21672399

Centisome position: 18.53

GC content: 23.27

Gene sequence:

>507_bases
ATGTCTATTACAATTATTTTAATTTTTTCTATCTTATCTTTTCTTTTAGGTATAATATTAAGTTATGTAAAATATATTTT
TCCAATAAAAAAAAATTCTATTATAGCTGAAGTTGATGATTTATTACCGCAGAGTCAATGTGCACAATGTGGTTACTCTG
GATGTTATCCTTATGCAAAAGCAATAGTTAAAAATAATGAAAATATTGATAAATGCATTCCTGGAGGAAATAATTTAAAA
TTTAAAATTGCCAAGGTACTTAATATAAAAAATATTAAATACTCTTTAGATAATTTAAATGCTAAAAATGAAAAAAATAT
TCATACTACTGTTTTAATTGATGAAAAAAATTGTGTTGGTTGTTCTAAATGTGCTTCTTTTTGTCCAGTAGATGCAATAA
TTGGTACTCCTAATTTCATGCATACAGTGTTACAAAAATTTTGTACTGGTTGTAACATTTGTTTATTACACTGTCCTACA
AATTGTATAAAAATAATTAAAGAATAA

Upstream 100 bases:

>100_bases
ACGTTCCTTTAGCATTTCAAGGGTCGCCTATTGTTCTTATTACTGTAAGTTTAATATCTATTGTATTTATGGGGTTTAAA
GGTTTAGTGAGAATTTAATT

Downstream 100 bases:

>100_bases
TATAAAATGTTAAAAATAAATTTTTTTTTAAAAATATTTCTCATTAAATACTGGAAAAATTTAATTGTTAATTTTATAAA
TAAAAAATTTTTAAATAAAA

Product: putative ferredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSITIILIFSILSFLLGIILSYVKYIFPIKKNSIIAEVDDLLPQSQCAQCGYSGCYPYAKAIVKNNENIDKCIPGGNNLK
FKIAKVLNIKNIKYSLDNLNAKNEKNIHTTVLIDEKNCVGCSKCASFCPVDAIIGTPNFMHTVLQKFCTGCNICLLHCPT
NCIKIIKE

Sequences:

>Translated_168_residues
MSITIILIFSILSFLLGIILSYVKYIFPIKKNSIIAEVDDLLPQSQCAQCGYSGCYPYAKAIVKNNENIDKCIPGGNNLK
FKIAKVLNIKNIKYSLDNLNAKNEKNIHTTVLIDEKNCVGCSKCASFCPVDAIIGTPNFMHTVLQKFCTGCNICLLHCPT
NCIKIIKE
>Mature_167_residues
SITIILIFSILSFLLGIILSYVKYIFPIKKNSIIAEVDDLLPQSQCAQCGYSGCYPYAKAIVKNNENIDKCIPGGNNLKF
KIAKVLNIKNIKYSLDNLNAKNEKNIHTTVLIDEKNCVGCSKCASFCPVDAIIGTPNFMHTVLQKFCTGCNICLLHCPTN
CIKIIKE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cytoplasm. Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=160, Percent_Identity=44.375, Blast_Score=157, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_BUCAP (Q8KA20)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660465.1
- ProteinModelPortal:   Q8KA20
- SMR:   Q8KA20
- EnsemblBacteria:   EBBUCT00000000202
- GeneID:   1005923
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg106
- GeneTree:   EBGT00050000007814
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- ProtClustDB:   CLSK390906
- BioCyc:   BAPH198804:BUSG106-MONOMER
- GO:   GO:0005737
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 18626; Mature: 18495

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
7.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITIILIFSILSFLLGIILSYVKYIFPIKKNSIIAEVDDLLPQSQCAQCGYSGCYPYAK
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHH
AIVKNNENIDKCIPGGNNLKFKIAKVLNIKNIKYSLDNLNAKNEKNIHTTVLIDEKNCVG
HHHCCCCCHHHCCCCCCCCEEEEEEHHHHCCCEEECCCCCCCCCCCCEEEEEEECCCCCC
CSKCASFCPVDAIIGTPNFMHTVLQKFCTGCNICLLHCPTNCIKIIKE
HHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SITIILIFSILSFLLGIILSYVKYIFPIKKNSIIAEVDDLLPQSQCAQCGYSGCYPYAK
EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHH
AIVKNNENIDKCIPGGNNLKFKIAKVLNIKNIKYSLDNLNAKNEKNIHTTVLIDEKNCVG
HHHCCCCCHHHCCCCCCCCEEEEEEHHHHCCCEEECCCCCCCCCCCCEEEEEEECCCCCC
CSKCASFCPVDAIIGTPNFMHTVLQKFCTGCNICLLHCPTNCIKIIKE
HHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438