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The map label for this gene is xynB [H]

Identifier: 21244971

GI number: 21244971

Start: 5020699

End: 5021691

Strand: Reverse

Name: xynB [H]

Synonym: XAC4254

Alternate gene names: 21244971

Gene position: 5021691-5020699 (Counterclockwise)

Preceding gene: 21244972

Following gene: 21244970

Centisome position: 97.03

GC content: 63.95

Gene sequence:

>993_bases
ATGCACATGCGCGCAGTAATACTGGGGTTGTCGATGGCGGCCGGCATGGCCGCGCCTGTACACGCGGCACCACTGGCAGC
GACAGCGTCCAAGTTCCTCGGATGTGCGTACGGCGCGCAGCAGGCGCCGGGGTTTGCGCAGTACTGGAACAAGCTCACCC
CGGAAAACGGCGGCAAATGGGGCAGCGTGGAGGCCGTGCGCGACCAGATGGATTGGAGCACGCTGGATGCCGCATACCGG
TTCGCCCAGGCCAATCAGATGCCGTTCCAGATGCATGTCATGGTGTGGGGCAACCAGCAGCCGGAATGGATCAAGACCTT
GCGGCCGGCCGAACAGCGCCGCGAGATCGAGCAGTGGTTTGCCGCCGTTGCGCAGCGCTACCCGGATATCGCACTGCTGG
AGGTGGTGAACGAGCCACTCAACGACCCGCCTAGCAAGGCCGATACCGGCGGCGGCAATTATCTGCAGGCGTTGGGGGGC
AACGGCGACAGCGGCTGGGAATGGGTGTTGCAATCGTTTCGGCTTGCGCGCCGGCATTTTCCGCACACCAAGTTGATGAT
CAACGACTACAGCATCACCAGTAGCGCGCAGGCCACGCAGAAGTATTTGCAGATCGTGCGGCTGCTGCAGCGTGAGAACC
TGGTCGATGCCATCGGCGTGCAGGAGCACGCCTTCGAGACCACGCCGGAGGTTGCGGTGTCGGTGCACCGCGACAATCTG
GATGCGTTGGCCGCCACCGGCCTGCCGATCTACATCACCGAGTTCGATCTGGACGGCCCGACCGATGCGCAGCAGCTGGC
CGACTACAAGCGGGTGTTTCCGGTGTTCTGGGAACACCCGGCAGTGCATGGCATCACCTTGTGGGGCTTTCGGCCCGGTT
TGTGGCGCGACAAGGAAGCTGCGTACCTGATCCGCGCCGACGGCACCGAACGTCCCGCGCTCACGTGGCTGCGCGATTAC
GTTGCTGCCCATCCCGGTACACCTGCGCCATGA

Upstream 100 bases:

>100_bases
TACCTGCTGGCATTGGCGCTCGTGCACACTCTGGTGCCGCGGCTGGAGCCGGCGCAGTTGCCTGCCGATCCCAGCGCCGA
CATCGTCCTGAGGTGAGCTT

Downstream 100 bases:

>100_bases
CAATTGCTGATGCTCACCGCGCTCGCAGACACTTACGTGGTGTCCTGACCTTATGCCGCAGGCATCATGTCATCGTGCTG
GCTGCATGCATCGTGCGGCG

Product: xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MHMRAVILGLSMAAGMAAPVHAAPLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKWGSVEAVRDQMDWSTLDAAYR
FAQANQMPFQMHVMVWGNQQPEWIKTLRPAEQRREIEQWFAAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGG
NGDSGWEWVLQSFRLARRHFPHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVAVSVHRDNL
DALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEAAYLIRADGTERPALTWLRDY
VAAHPGTPAP

Sequences:

>Translated_330_residues
MHMRAVILGLSMAAGMAAPVHAAPLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKWGSVEAVRDQMDWSTLDAAYR
FAQANQMPFQMHVMVWGNQQPEWIKTLRPAEQRREIEQWFAAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGG
NGDSGWEWVLQSFRLARRHFPHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVAVSVHRDNL
DALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEAAYLIRADGTERPALTWLRDY
VAAHPGTPAP
>Mature_330_residues
MHMRAVILGLSMAAGMAAPVHAAPLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKWGSVEAVRDQMDWSTLDAAYR
FAQANQMPFQMHVMVWGNQQPEWIKTLRPAEQRREIEQWFAAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGG
NGDSGWEWVLQSFRLARRHFPHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVAVSVHRDNL
DALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEAAYLIRADGTERPALTWLRDY
VAAHPGTPAP

Specific function: Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls [H]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR005084
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00553 CBM_2; PF03422 CBM_6; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36806; Mature: 36806

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMRAVILGLSMAAGMAAPVHAAPLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKW
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
GSVEAVRDQMDWSTLDAAYRFAQANQMPFQMHVMVWGNQQPEWIKTLRPAEQRREIEQWF
CCHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHHHHH
AAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGGNGDSGWEWVLQSFRLARRHF
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
PHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVAVSVHRDNL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCHHEEEEECCCH
DALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEA
HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
AYLIRADGTERPALTWLRDYVAAHPGTPAP
EEEEECCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHMRAVILGLSMAAGMAAPVHAAPLAATASKFLGCAYGAQQAPGFAQYWNKLTPENGGKW
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
GSVEAVRDQMDWSTLDAAYRFAQANQMPFQMHVMVWGNQQPEWIKTLRPAEQRREIEQWF
CCHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHHHHH
AAVAQRYPDIALLEVVNEPLNDPPSKADTGGGNYLQALGGNGDSGWEWVLQSFRLARRHF
HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
PHTKLMINDYSITSSAQATQKYLQIVRLLQRENLVDAIGVQEHAFETTPEVAVSVHRDNL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCHHEEEEECCCH
DALAATGLPIYITEFDLDGPTDAQQLADYKRVFPVFWEHPAVHGITLWGFRPGLWRDKEA
HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
AYLIRADGTERPALTWLRDYVAAHPGTPAP
EEEEECCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125205 [H]